Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.516-201ENST00000384541 124 ntBASIC3.25□□□□□ -1.89
MSH3P20585 MIR135A2-201ENST00000384854 100 ntBASIC3.25□□□□□ -1.89
MSH3P20585 MIR19A-201ENST00000384878 82 ntBASIC3.25□□□□□ -1.89
MSH3P20585 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH3P20585 MTCO3P12-201ENST00000416718 547 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH3P20585 AC099677.1-201ENST00000420575 175 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH3P20585 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH3P20585 RPL23AP22-201ENST00000437556 453 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH3P20585 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH3P20585 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH3P20585 Z99127.3-201ENST00000448158 395 ntBASIC3.25□□□□□ -1.89
MSH3P20585 NANOGNBP1-201ENST00000448444 480 ntBASIC3.25□□□□□ -1.89
MSH3P20585 RPL21P104-201ENST00000464143 478 ntBASIC3.25□□□□□ -1.89
MSH3P20585 RN7SL601P-201ENST00000471221 293 ntBASIC3.25□□□□□ -1.89
MSH3P20585 RPL7P23-201ENST00000493874 747 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.25□□□□□ -1.89
MSH3P20585 AC110794.1-201ENST00000505816 425 ntBASIC3.25□□□□□ -1.89
MSH3P20585 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH3P20585 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH3P20585 AC018630.1-201ENST00000541376 925 ntBASIC3.25□□□□□ -1.89
MSH3P20585 SYF2P1-201ENST00000550658 413 ntBASIC3.25□□□□□ -1.89
MSH3P20585 HIGD1AP1-201ENST00000550979 275 ntBASIC3.25□□□□□ -1.89
MSH3P20585 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.25□□□□□ -1.89
MSH3P20585 OR4T1P-201ENST00000554933 911 ntBASIC3.25□□□□□ -1.89
MSH3P20585 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.25□□□□□ -1.89
MSH3P20585 AC010546.1-201ENST00000569391 485 ntBASIC3.25□□□□□ -1.89
MSH3P20585 MIR3146-201ENST00000580367 79 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH3P20585 AC025165.5-201ENST00000602802 578 ntBASIC3.25□□□□□ -1.89
MSH3P20585 SRGNP1-201ENST00000603392 451 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AC073657.2-201ENST00000605661 303 ntBASIC3.25□□□□□ -1.89
MSH3P20585 TUG1_1.1-201ENST00000610654 145 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AC072046.2-201ENST00000618366 268 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH3P20585 AC112204.3-201ENST00000623822 332 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AL159972.1-201ENST00000625150 448 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH3P20585 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.25□□□□□ -1.89
MSH3P20585 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.25□□□□□ -1.89
MSH3P20585 SRP72P2-201ENST00000344851 1979 ntBASIC3.25□□□□□ -1.89
MSH3P20585 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.24□□□□□ -1.89
MSH3P20585 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
MSH3P20585 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSH3P20585 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSH3P20585 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSH3P20585 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
MSH3P20585 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
MSH3P20585 RNU1-70P-201ENST00000362618 164 ntBASIC3.24□□□□□ -1.89
MSH3P20585 RNA5SP267-201ENST00000364893 126 ntBASIC3.24□□□□□ -1.89
MSH3P20585 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
MSH3P20585 RNVU1-14-201ENST00000384770 164 ntBASIC3.24□□□□□ -1.89
MSH3P20585 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
MSH3P20585 RPL23AP32-201ENST00000395315 459 ntBASIC3.24□□□□□ -1.89
MSH3P20585 RPS3AP36-201ENST00000398190 775 ntBASIC3.24□□□□□ -1.89
MSH3P20585 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 MRPL42P2-201ENST00000403169 426 ntBASIC3.24□□□□□ -1.89
MSH3P20585 RNU6-195P-201ENST00000411352 109 ntBASIC3.24□□□□□ -1.89
MSH3P20585 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.24□□□□□ -1.89
MSH3P20585 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSH3P20585 BX295541.1-201ENST00000417774 250 ntBASIC3.24□□□□□ -1.89
MSH3P20585 AL137014.1-201ENST00000420490 1226 ntBASIC3.24□□□□□ -1.89
MSH3P20585 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 AL158156.1-201ENST00000422509 473 ntBASIC3.24□□□□□ -1.89
MSH3P20585 ISCA1P6-201ENST00000427740 390 ntBASIC3.24□□□□□ -1.89
MSH3P20585 OR4K11P-201ENST00000431829 904 ntBASIC3.24□□□□□ -1.89
MSH3P20585 USP9YP28-201ENST00000435142 589 ntBASIC3.24□□□□□ -1.89
MSH3P20585 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 TPT1P14-201ENST00000448018 505 ntBASIC3.24□□□□□ -1.89
MSH3P20585 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.24□□□□□ -1.89
MSH3P20585 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.24□□□□□ -1.89
MSH3P20585 AC034236.1-201ENST00000469891 373 ntBASIC3.24□□□□□ -1.89
MSH3P20585 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSH3P20585 RPL9P33-201ENST00000484311 566 ntBASIC3.24□□□□□ -1.89
MSH3P20585 KCTD9P5-201ENST00000504141 1170 ntBASIC3.24□□□□□ -1.89
MSH3P20585 AC114967.1-201ENST00000504890 259 ntBASIC3.24□□□□□ -1.89
MSH3P20585 HSPD1P15-201ENST00000505573 1122 ntBASIC3.24□□□□□ -1.89
MSH3P20585 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.24□□□□□ -1.89
MSH3P20585 AC103783.1-201ENST00000520506 373 ntBASIC3.24□□□□□ -1.89
MSH3P20585 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.24□□□□□ -1.89
MSH3P20585 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.24□□□□□ -1.89
MSH3P20585 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.24□□□□□ -1.89
MSH3P20585 NRBF2P1-201ENST00000587407 859 ntBASIC3.24□□□□□ -1.89
MSH3P20585 AP001429.1-201ENST00000602568 530 ntBASIC3.24□□□□□ -1.89
MSH3P20585 AL158211.4-201ENST00000606988 584 ntBASIC3.24□□□□□ -1.89
MSH3P20585 AC107294.3-201ENST00000609211 526 ntBASIC3.24□□□□□ -1.89
MSH3P20585 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSH3P20585 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSH3P20585 AC099654.12-201ENST00000639868 649 ntBASIC3.24□□□□□ -1.89
MSH3P20585 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.24□□□□□ -1.89
MSH3P20585 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSH3P20585 MTND5P27-201ENST00000428871 1720 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms