Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.61□□□□□ -1.67
COL6A1P12109 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.61□□□□□ -1.67
COL6A1P12109 AC006064.5-201ENST00000541782 248 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.61□□□□□ -1.67
COL6A1P12109 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.61□□□□□ -1.67
COL6A1P12109 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.61□□□□□ -1.67
COL6A1P12109 AP001330.4-201ENST00000604350 154 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 AL121655.1-201ENST00000605811 308 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 AL034408.1-202ENST00000636088 415 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 MTND5P42-201ENST00000637720 498 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
COL6A1P12109 GABPAP-201ENST00000419271 1356 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A1P12109 AC004972.1-201ENST00000623934 2209 ntBASIC4.61□□□□□ -1.67
COL6A1P12109 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.61□□□□□ -1.67
COL6A1P12109 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A1P12109 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL6A1P12109 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A1P12109 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.6□□□□□ -1.67
COL6A1P12109 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL6A1P12109 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A1P12109 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A1P12109 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.6□□□□□ -1.67
COL6A1P12109 Y_RNA.132-201ENST00000363421 102 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 Y_RNA.216-201ENST00000364205 93 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 U3.11-201ENST00000364476 212 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 RNU4-66P-201ENST00000365199 138 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
COL6A1P12109 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
COL6A1P12109 RNU6-1013P-201ENST00000384180 107 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 RNU6-43P-201ENST00000384302 107 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 RNU1-44P-201ENST00000384453 163 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 MIR558-201ENST00000384920 94 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 MIR183-201ENST00000384958 110 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL6A1P12109 SNORA75.4-201ENST00000391278 119 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AL606923.1-201ENST00000406616 190 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 HSPE1P12-201ENST00000412576 301 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AL161631.1-201ENST00000417933 486 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 ARL5AP1-201ENST00000418991 388 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 OR1AA1P-201ENST00000419597 916 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A1P12109 MED13P1-201ENST00000428342 171 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A1P12109 MRPS18BP2-201ENST00000434310 759 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A1P12109 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A1P12109 PRDX3P3-201ENST00000447765 522 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AL451050.1-201ENST00000450126 415 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A1P12109 AC104308.1-201ENST00000454621 333 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AC108751.2-201ENST00000469993 231 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 RPS4XP13-201ENST00000483219 789 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 RNU6-559P-201ENST00000516151 98 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AC090151.1-201ENST00000520784 730 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.6□□□□□ -1.67
COL6A1P12109 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.6□□□□□ -1.67
COL6A1P12109 AL121603.1-201ENST00000553815 142 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A1P12109 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
COL6A1P12109 AC103710.3-201ENST00000608157 948 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AC245517.5-201ENST00000611529 162 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A1P12109 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A1P12109 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.6□□□□□ -1.67
COL6A1P12109 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.6□□□□□ -1.67
COL6A1P12109 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A1P12109 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A1P12109 NEAT1-202ENST00000501122 22743 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A1P12109 AC139713.2-215ENST00000641428 5037 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL6A1P12109 AC116667.1-201ENST00000604855 2072 ntBASIC4.6□□□□□ -1.67
COL6A1P12109 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.59□□□□□ -1.67
COL6A1P12109 RNU4-20P-201ENST00000365601 151 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 RNU6-39P-201ENST00000384344 107 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 RNU6-1160P-201ENST00000384546 104 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 RNU6-831P-201ENST00000384548 107 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 MIR30B-201ENST00000384850 88 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 RNU6-278P-201ENST00000390945 109 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 HSPE1P26-201ENST00000405341 275 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 AL583834.1-201ENST00000406943 343 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 HMGN1P24-201ENST00000412282 298 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 VN1R36P-201ENST00000414936 291 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 RBMY1KP-201ENST00000423480 476 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.59□□□□□ -1.67
COL6A1P12109 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
COL6A1P12109 FTH1P1-201ENST00000437933 532 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 HMGB1P12-201ENST00000438594 598 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.59□□□□□ -1.67
COL6A1P12109 Y_RNA.639-201ENST00000458981 102 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 Y_RNA.631-201ENST00000459607 101 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 AC010285.1-201ENST00000470580 392 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 RPL23AP11-201ENST00000475260 469 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.59□□□□□ -1.67
COL6A1P12109 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A1P12109 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.59□□□□□ -1.67
COL6A1P12109 AC004062.1-201ENST00000509926 645 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 NDUFB4P9-201ENST00000511646 388 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 TTC39CP1-201ENST00000512513 755 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms