Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA3O43365 MTND3P25-201ENST00000509243 135 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA3O43365 APOOP4-201ENST00000513530 597 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA3O43365 SNORA31.20-201ENST00000517111 133 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 RNU6-709P-201ENST00000517257 104 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXA3O43365 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXA3O43365 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA3O43365 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA3O43365 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA3O43365 AC011890.2-201ENST00000613393 294 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 PLCE1P1-201ENST00000622094 305 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 LDHA-225ENST00000625635 141 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA3O43365 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXA3O43365 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA3O43365 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA3O43365 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.82□□□□□ -1.8
HOXA3O43365 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA3O43365 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA3O43365 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXA3O43365 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA3O43365 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA3O43365 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 AC004925.1-201ENST00000624256 2706 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 MED23-203ENST00000368058 4576 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA3O43365 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
HOXA3O43365 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA3O43365 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 RNU6-1309P-201ENST00000363305 108 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 Y_RNA.158-201ENST00000363651 101 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 RNU6-173P-201ENST00000364215 104 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 RNU6-1032P-201ENST00000384100 107 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 RNU6-306P-201ENST00000384617 107 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HOXA3O43365 SNORA75.6-201ENST00000391318 127 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 LAP3P1-201ENST00000403648 294 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AC063979.1-201ENST00000415539 377 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 MCFD2P1-201ENST00000417812 300 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 RPL36AP10-201ENST00000421785 322 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 RPL23AP1-201ENST00000428990 471 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA3O43365 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA3O43365 IPO7P1-201ENST00000442031 636 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 RPL7AP61-201ENST00000443410 636 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AL360271.2-201ENST00000447710 161 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA3O43365 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA3O43365 RNU7-138P-201ENST00000459479 64 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AC087588.1-201ENST00000462203 316 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA3O43365 RNU6-470P-201ENST00000515954 104 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AP004371.1-201ENST00000525240 214 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 DERA-209ENST00000532964 854 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA3O43365 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA3O43365 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA3O43365 PARP1P2-201ENST00000556806 195 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AC022968.1-201ENST00000567372 442 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 HMGB2P1-201ENST00000591146 634 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXA3O43365 AC106900.2-201ENST00000604994 317 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AL161423.1-201ENST00000613700 262 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AL132822.1-201ENST00000617063 513 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AL031601.2-202ENST00000622650 282 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 AL732372.2-225ENST00000642124 456 ntBASIC3.81□□□□□ -1.8
HOXA3O43365 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA3O43365 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA3O43365 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 SDAD1P2-201ENST00000441308 2028 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA3O43365 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 RNA5SP52-201ENST00000362448 134 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 SNORA70.2-201ENST00000364506 135 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 Y_RNA.252-201ENST00000364556 101 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 SNORA71.2-201ENST00000364941 134 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 MIR129-1-201ENST00000384972 72 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 U3.22-201ENST00000391120 215 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 RNA5SP397-201ENST00000391323 118 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 MRPL42P3-201ENST00000401492 326 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 RN7SKP267-201ENST00000410381 285 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 Y_RNA.605-201ENST00000410577 105 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 RNU6-293P-201ENST00000411259 106 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA3O43365 USP9YP30-201ENST00000430729 455 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 AL162591.2-201ENST00000449634 317 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 SNORD5.1-201ENST00000458800 75 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 143.7 ms