Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AL359693.1-201ENST00000614959 2407 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 RNU5E-7P-201ENST00000365290 117 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 SNORA40C-201ENST00000391285 128 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 Z85995.1-201ENST00000415547 335 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 SRSF1P1-201ENST00000424058 520 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 RPL21P40-201ENST00000428586 483 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 OR4C10P-201ENST00000434991 931 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 RPS29P33-201ENST00000456717 146 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 snoU13.20-201ENST00000459180 104 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AC034236.1-201ENST00000469891 373 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AP004607.2-201ENST00000533949 322 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AC092490.3-201ENST00000545370 572 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AC090617.3-201ENST00000573670 475 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AC087783.2-201ENST00000605070 562 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AC006065.5-201ENST00000623427 349 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AC097372.5-201ENST00000623665 376 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 AC007785.2-201ENST00000598627 1916 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIMD1Q9UGP4 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 RNA5SP123-201ENST00000363244 119 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 Y_RNA.123-201ENST00000363338 102 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 RNA5SP235-201ENST00000365411 114 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 BTF3L4P2-201ENST00000392798 346 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AL033519.2-201ENST00000403958 392 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 NDUFB4P7-201ENST00000423198 363 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AC079780.1-201ENST00000428259 207 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 RN7SL738P-201ENST00000470264 297 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AP000797.2-201ENST00000475768 606 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 SERF1AP1-201ENST00000514575 187 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AL671862.1-201ENST00000515851 349 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 Y_RNA.703-201ENST00000516846 111 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 SCARNA16.4-201ENST00000516956 187 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AP004371.1-201ENST00000525240 214 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 MIR378J-201ENST00000611988 109 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AC240442.1-201ENST00000616055 283 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AC027309.3-201ENST00000623419 351 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 BCORP1-203ENST00000513194 5093 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 AL353796.1-201ENST00000561542 3241 ntBASIC5.68□□□□□ -1.5
LIMD1Q9UGP4 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 Y_RNA.199-201ENST00000364014 102 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 U3.10-201ENST00000364459 214 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 RNU4-9P-201ENST00000364951 139 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 Y_RNA.541-201ENST00000384640 113 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 GSTM5P1-201ENST00000434751 660 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 RNU7-120P-201ENST00000459334 63 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 RNU6-1012P-201ENST00000516606 109 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 SNORA31.19-201ENST00000517079 126 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 IGHVII-53-1-201ENST00000519538 255 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 RN7SL52P-201ENST00000584271 284 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 AC060780.2-201ENST00000589047 198 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 RN7SL722P-201ENST00000617780 284 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 RN7SL565P-201ENST00000618246 284 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 SAMMSON-213ENST00000641336 1521 ntBASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIMD1Q9UGP4 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 Y_RNA.16-201ENST00000362421 102 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 RN7SKP95-201ENST00000362860 303 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 RNU6-428P-201ENST00000362942 107 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms