Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 RNU6-475P-201ENST00000516073 104 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC068446.3-201ENST00000555285 382 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 HMGB3P26-201ENST00000560051 582 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC017100.2-201ENST00000584628 355 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC068790.3-201ENST00000602988 553 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 IGHV3-29-201ENST00000604817 344 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC010201.1-201ENST00000605051 540 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 FAM25E-202ENST00000608562 189 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 MIR6128-201ENST00000615528 109 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AL512643.1-201ENST00000635735 524 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AC021146.4-201ENST00000309229 279 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.14-201ENST00000362415 103 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.106-201ENST00000363189 100 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 RNU6-746P-201ENST00000384112 109 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.477-201ENST00000384352 108 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 RPL21P1-201ENST00000399532 476 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 POLHP1-201ENST00000411806 470 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 SNAP23P1-201ENST00000433229 246 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 RPL23AP89-201ENST00000439324 255 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AC114495.1-201ENST00000441274 436 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 RN7SL610P-201ENST00000463845 291 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AC093267.1-201ENST00000489176 961 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 TXNP6-201ENST00000510190 310 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.670-201ENST00000516255 105 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.708-201ENST00000516950 96 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AC135001.1-201ENST00000544546 283 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AC096772.1-201ENST00000609146 564 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 AL138726.1-201ENST00000614873 333 ntBASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC39Q9UFE4 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 RNU6-444P-201ENST00000383988 108 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.473-201ENST00000384333 102 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AL590135.1-201ENST00000422215 156 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 RPS12P10-201ENST00000427031 377 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AL360081.1-201ENST00000428299 555 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 CEACAMP1-201ENST00000434624 1035 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC104332.1-201ENST00000440471 797 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AL121871.1-201ENST00000443413 436 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 HMGN3P1-201ENST00000453847 193 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 MTCO3P2-201ENST00000457365 171 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC103987.1-201ENST00000473394 348 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC116337.1-201ENST00000509680 687 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 RNU6-488P-201ENST00000515918 99 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 RN7SKP96-201ENST00000516948 297 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC022616.4-201ENST00000522985 181 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC090281.1-201ENST00000523019 276 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AP003385.6-201ENST00000531603 374 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 MIR4270-201ENST00000581799 70 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 BPIFA4P-203ENST00000603168 689 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 SNORD58B-201ENST00000607313 66 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC103710.2-201ENST00000609912 942 ntBASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms