Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC092573.2-201ENST00000434546 243 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AL591719.1-201ENST00000444669 744 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AP000542.1-201ENST00000448473 371 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 CASP1P1-201ENST00000526345 212 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 DNAJC8P1-201ENST00000554535 372 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC078899.3-201ENST00000599065 212 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 OR2AS2P-201ENST00000606902 342 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC097468.3-201ENST00000607956 456 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC131902.3-201ENST00000611767 581 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 MIR6130-201ENST00000619419 109 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AP000676.4-201ENST00000624659 623 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AC092447.10-201ENST00000620607 1652 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 AP000526.1-201ENST00000603308 1388 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3□□□□□ -1.93
VPS54Q9P1Q0 AL672167.1-206ENST00000356293 943 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 RNU5E-8P-201ENST00000363502 116 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
VPS54Q9P1Q0 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3□□□□□ -1.93
VPS54Q9P1Q0 MTCO1P17-201ENST00000411522 491 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 USP9YP20-201ENST00000419224 558 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 XKRYP1-201ENST00000423438 492 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 PPP1R11P2-201ENST00000423543 382 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 MTND1P20-201ENST00000430341 950 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 XKRYP2-201ENST00000432915 492 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 AC011816.1-201ENST00000441346 546 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3□□□□□ -1.93
VPS54Q9P1Q0 GSTA11P-201ENST00000452866 669 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 AL590639.1-201ENST00000456484 337 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 HSPE1P6-201ENST00000479457 291 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 SRIP1-201ENST00000489235 288 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3□□□□□ -1.93
VPS54Q9P1Q0 AC007536.1-201ENST00000533382 349 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 AC128657.1-201ENST00000549459 145 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3□□□□□ -1.93
VPS54Q9P1Q0 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3□□□□□ -1.93
VPS54Q9P1Q0 AC136618.2-201ENST00000575091 400 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 MIR4999-201ENST00000585029 91 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3□□□□□ -1.93
VPS54Q9P1Q0 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3□□□□□ -1.93
VPS54Q9P1Q0 AF131215.7-201ENST00000602443 707 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 DUXAP4-201ENST00000603046 613 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 AC027309.3-201ENST00000623419 351 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3□□□□□ -1.93
VPS54Q9P1Q0 LRRC77P-213ENST00000637727 880 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
VPS54Q9P1Q0 AC233263.6-201ENST00000631132 1963 ntBASIC3□□□□□ -1.93
VPS54Q9P1Q0 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 RNA5SP88-201ENST00000365560 109 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 RNA5SP252-201ENST00000391131 119 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 MIR887-201ENST00000401258 79 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 RPLP0P7-201ENST00000416050 667 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AL022400.1-201ENST00000423946 935 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AL445669.1-201ENST00000426743 755 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AC063976.3-201ENST00000426849 329 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AL035407.1-201ENST00000429211 571 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 YWHAZP7-201ENST00000436906 631 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 RPL23AP58-201ENST00000440453 469 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AL109933.2-201ENST00000452651 260 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AL031183.1-201ENST00000457667 207 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AC093809.1-201ENST00000509155 340 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AC006445.2-201ENST00000510061 472 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 MTND5P4-201ENST00000514978 288 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 RNA5SP216-201ENST00000516111 123 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 RNU6-798P-201ENST00000516912 103 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 EEF1A1P37-201ENST00000522748 715 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 ELOCP31-201ENST00000540463 467 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AC022022.2-201ENST00000602989 360 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms