Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 OR5P1P-201ENST00000299512 925 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RNU1-108P-201ENST00000362556 161 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 Y_RNA.184-201ENST00000363884 108 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RNU6-715P-201ENST00000365204 103 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 Y_RNA.431-201ENST00000384086 102 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RPL23AP48-201ENST00000406913 488 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 BX682237.1-201ENST00000415016 335 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AL139095.3-201ENST00000419672 1203 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RPL18P10-201ENST00000425606 538 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 NDUFS5P3-201ENST00000450668 321 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 DHFRP3-201ENST00000455595 559 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RPL23AP24-201ENST00000458203 385 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RNU7-167P-201ENST00000459160 62 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RPL31P13-201ENST00000484151 370 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 MTCO3P9-201ENST00000506989 781 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RPL23AP87-202ENST00000573039 466 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AL355375.2-201ENST00000574825 175 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RPL7P50-201ENST00000600588 727 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AC079587.1-201ENST00000603846 277 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 CTHRC1P1-201ENST00000605383 469 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 MIR15A-201ENST00000607334 83 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AC015813.4-201ENST00000610469 179 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 uc_338.15-201ENST00000615470 191 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 AC116096.1-201ENST00000566804 2314 ntBASIC4.38□□□□□ -1.71
TRIM39Q9HCM9 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC011266.1-201ENST00000624119 3569 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 EOGT-210ENST00000615922 1931 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 UBE2L2-201ENST00000254302 429 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RNU4-79P-201ENST00000362764 141 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 MIR708-201ENST00000390708 88 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RNA5SP372-201ENST00000390836 115 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 SNORA11F-201ENST00000408237 128 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RPS29P17-201ENST00000430795 166 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 PHBP16-201ENST00000446318 950 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RN7SL98P-201ENST00000462271 300 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AP000873.1-201ENST00000463987 400 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC011276.1-201ENST00000469688 323 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RPS20P22-201ENST00000473700 357 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RN7SL817P-201ENST00000480777 288 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RN7SL812P-201ENST00000493791 279 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 HMGN1P13-201ENST00000505795 138 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC093840.1-201ENST00000511599 336 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RNU6-914P-201ENST00000516749 109 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RNA5SP291-201ENST00000517222 105 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC090136.1-201ENST00000520009 240 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AP000889.2-201ENST00000532684 490 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 RPL21P7-201ENST00000557463 483 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms