Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC099778.2-201ENST00000610904 211 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 MIR6852-201ENST00000621699 66 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC018692.3-201ENST00000623929 123 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 SNORA50A-202ENST00000629536 136 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 RNU5F-7P-201ENST00000363696 115 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 RNU5A-8P-201ENST00000364102 114 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 RNU6-809P-201ENST00000384461 107 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 RNY3P10-201ENST00000384764 102 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 MIR184-201ENST00000384962 84 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 SNORA48.8-201ENST00000391324 134 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AL109755.1-201ENST00000401791 649 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AL356583.2-201ENST00000426536 280 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 RPL23AP69-201ENST00000431134 458 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AL353705.1-201ENST00000433468 480 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 TAF9P1-201ENST00000445421 515 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 MTND1P29-201ENST00000448112 647 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 HMGB3P8-201ENST00000449709 577 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 SSXP4-201ENST00000451349 245 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 TAF9P2-201ENST00000454958 515 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 SNRPGP9-201ENST00000456025 225 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 SNORD42A-201ENST00000459584 64 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 RPS27AP1-201ENST00000475545 471 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC117532.1-201ENST00000514638 323 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 RNU1-61P-201ENST00000516107 151 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC060788.1-201ENST00000521318 469 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AP000907.2-201ENST00000530827 353 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AL133153.1-201ENST00000557756 303 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC005771.1-201ENST00000585581 349 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC105224.1-201ENST00000587055 421 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AP001330.4-201ENST00000604350 154 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC087752.4-201ENST00000605911 462 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC007038.2-201ENST00000608095 740 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 BX664608.1-201ENST00000610519 487 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC048344.4-201ENST00000619744 527 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AC007496.3-201ENST00000624987 3443 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 AL079305.1-201ENST00000623159 3008 ntBASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC3Q9BQI4 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 RNU6-432P-201ENST00000384196 109 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AL365338.1-201ENST00000422282 858 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 FTH1P1-201ENST00000437933 532 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 RPL22P17-201ENST00000438729 315 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 RABEPKP1-201ENST00000440529 1026 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 Z99127.3-201ENST00000448158 395 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AL162389.1-201ENST00000449233 177 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC140076.1-201ENST00000449897 361 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC108059.3-201ENST00000456388 214 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AP002884.2-201ENST00000471647 395 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC012181.1-201ENST00000479895 423 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC108860.1-201ENST00000484521 383 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC096576.1-201ENST00000489014 359 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 CDC42P4-201ENST00000510507 563 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 Y_RNA.695-201ENST00000516715 107 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 ERHP1-201ENST00000523006 310 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AP002404.1-201ENST00000532005 451 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AL133271.1-201ENST00000538229 291 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AL845331.3-202ENST00000562856 261 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 KC877982.1-201ENST00000602313 470 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AP001981.2-201ENST00000603241 418 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 RNU6-87P-201ENST00000607561 108 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms