Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SDAD1P2-201ENST00000441308 2028 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 HSPE1P11-201ENST00000339579 310 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 RHOT1P2-201ENST00000366423 333 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 Y_RNA.395-201ENST00000383945 109 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 Y_RNA.615-201ENST00000410769 117 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 GPR143P-201ENST00000434155 205 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC104651.2-201ENST00000447549 528 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AL356010.1-201ENST00000456364 102 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 RNU7-63P-201ENST00000459054 62 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 SNORD97-201ENST00000459187 142 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC109327.1-201ENST00000471666 403 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC010631.1-201ENST00000474150 156 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC078785.3-201ENST00000476607 425 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC092451.1-201ENST00000480211 153 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC106872.2-201ENST00000494303 480 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 TTC39CP1-201ENST00000512513 755 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 MIR3921-201ENST00000577308 85 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC093913.1-201ENST00000614178 329 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 SDR42E1P2-201ENST00000614861 481 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC244100.1-202ENST00000621554 382 ntBASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLIP3Q96DZ5 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC010733.2-201ENST00000589496 5702 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 MIR659-201ENST00000384963 97 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 MIR195-201ENST00000385194 87 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AL359634.1-202ENST00000404721 284 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 CRYBB2P1-203ENST00000415709 538 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 RPS3AP52-201ENST00000435639 297 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 CYCSP43-201ENST00000438233 310 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 FTH1P9-201ENST00000513251 355 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 RNU6-390P-201ENST00000516259 103 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 RNU7-51P-201ENST00000516560 62 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 RNA5SP309-201ENST00000516670 106 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 Y_RNA.718-201ENST00000517110 102 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC023575.1-201ENST00000580510 358 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 MIR3668-201ENST00000582138 75 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 VN1R107P-201ENST00000601784 209 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC006006.1-201ENST00000603082 144 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC016925.2-201ENST00000605108 242 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AL627309.6-201ENST00000606857 840 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AP002826.1-201ENST00000608835 315 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC004696.1-201ENST00000614345 607 ntBASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLIP3Q96DZ5 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 RNU6-50P-201ENST00000362356 103 ntBASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 AC068538.1-201ENST00000376856 336 ntBASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 SNORA22B-201ENST00000383876 138 ntBASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 MIR514A2-201ENST00000385131 88 ntBASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 MIR514A3-201ENST00000385132 88 ntBASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 MT-TR-201ENST00000387439 65 ntBASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CLIP3Q96DZ5 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms