Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 AC010338.1-201ENST00000621823 717 ntBASIC3.71□□□□□ -1.82
CTHRC1Q96CG8 AC011155.2-201ENST00000623202 216 ntBASIC3.71□□□□□ -1.82
CTHRC1Q96CG8 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
CTHRC1Q96CG8 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CTHRC1Q96CG8 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CTHRC1Q96CG8 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CTHRC1Q96CG8 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
CTHRC1Q96CG8 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.71□□□□□ -1.82
CTHRC1Q96CG8 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AL139276.1-201ENST00000311910 1001 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 RNU6-845P-201ENST00000362578 103 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 RNU6-946P-201ENST00000383878 107 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 RNU6-629P-201ENST00000384061 103 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 RNU6-510P-201ENST00000391239 108 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 SOD2P1-201ENST00000396543 562 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 RPL21P65-201ENST00000406094 466 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AL162578.1-201ENST00000406202 378 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 ARL5AP1-201ENST00000418991 388 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 DUTP6-201ENST00000425573 462 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 MTND4P28-201ENST00000426217 387 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AL117339.2-201ENST00000430475 180 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 ERLEC1P1-201ENST00000433806 578 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 KCTD9P3-201ENST00000434597 1169 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 HMGB1P37-201ENST00000439613 609 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 RPL7P12-201ENST00000446719 750 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 GAPDHP27-201ENST00000447427 1020 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AL451050.1-201ENST00000450126 415 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AL645939.1-201ENST00000453429 797 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 RPL23AP11-201ENST00000475260 469 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AC087369.1-201ENST00000520775 996 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 SUMO2P20-201ENST00000520803 283 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AP005435.4-201ENST00000529514 284 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AC243972.3-201ENST00000539655 198 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 RPL23AP84-201ENST00000571193 464 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AC005261.5-201ENST00000596280 355 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AL353748.2-201ENST00000622148 471 ntBASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CTHRC1Q96CG8 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 Y_RNA.126-201ENST00000363382 111 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 Y_RNA.142-201ENST00000363491 102 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 Y_RNA.231-201ENST00000364358 102 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 Y_RNA.263-201ENST00000364659 114 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 RNA5SP283-201ENST00000365604 119 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 SMIM11P1-201ENST00000369586 178 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 Y_RNA.576-201ENST00000384781 102 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 RNU4-26P-201ENST00000410270 107 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 AL691449.1-201ENST00000426570 421 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 MTATP6P4-201ENST00000427725 675 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 ATP5HP2-201ENST00000433885 485 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 UBE2V1P7-201ENST00000446395 340 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 FABP5P13-201ENST00000452144 328 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 RPL21P99-201ENST00000480369 423 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 AC020593.1-201ENST00000507399 299 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 ERHP1-201ENST00000523006 310 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 MTND4P7-201ENST00000523876 130 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 RANP3-201ENST00000530970 276 ntBASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.69□□□□□ -1.82
CTHRC1Q96CG8 RAB11AP2-201ENST00000545905 639 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms