Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 Y_RNA.14-201ENST00000362415 103 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 SNORA51.8-201ENST00000384234 132 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 MIR578-201ENST00000384828 96 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 MIR105-2-201ENST00000385083 81 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 SAR1AP2-201ENST00000392696 594 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AL591034.2-201ENST00000402839 359 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 RNU4-78P-201ENST00000410940 126 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 RPS3AP12-201ENST00000443616 753 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC087588.1-201ENST00000462203 316 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 RN7SL214P-201ENST00000487317 265 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 RN7SL346P-201ENST00000491561 294 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 MTND3P25-201ENST00000509243 135 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 NDUFB4P9-201ENST00000511646 388 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 GMPSP1-201ENST00000514075 579 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 SNORA40.15-201ENST00000516884 107 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 Y_RNA.719-201ENST00000517156 106 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC008694.2-201ENST00000517591 306 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC027308.1-201ENST00000517993 110 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AL161713.1-201ENST00000555538 145 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC044860.2-201ENST00000561005 179 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC006600.1-201ENST00000572529 153 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 CYCSP40-201ENST00000575927 294 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC013244.1-201ENST00000604279 193 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AC006023.2-201ENST00000609916 167 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 FP236240.3-201ENST00000623061 327 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 AP001642.1-201ENST00000624727 2117 ntBASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
UBE3DQ7Z6J8 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 Y_RNA.117-201ENST00000363294 101 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 Y_RNA.214-201ENST00000364201 112 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 SNORA20.1-201ENST00000364790 130 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AC005522.1-201ENST00000395416 346 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AC063979.1-201ENST00000415539 377 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AL353997.1-201ENST00000432936 108 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AC112498.1-201ENST00000444401 332 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 CHEK2P4-201ENST00000450340 246 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 RPL39P38-201ENST00000467018 153 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 RPL12P20-201ENST00000475538 479 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 RN7SL558P-201ENST00000497468 299 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 RNA5SP249-201ENST00000516127 99 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 BNIP3P5-201ENST00000562290 498 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AC093249.4-201ENST00000564755 259 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 HMGB2P1-201ENST00000591146 634 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AC098479.1-201ENST00000609225 154 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AC107294.1-201ENST00000609524 467 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 AL022322.2-201ENST00000624072 20397 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 MUC2-202ENST00000613187 4845 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 ZNF285B-201ENST00000561698 1767 ntBASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
UBE3DQ7Z6J8 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 221.1 ms