Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC012150.2-201ENST00000621300 544 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AC079597.1-201ENST00000624306 508 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 LRRC77P-213ENST00000637727 880 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 TNPO1P3-201ENST00000436471 2662 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC011460.1-201ENST00000636268 1834 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 RNU6-1090P-201ENST00000364065 94 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 RNU6-534P-201ENST00000364877 106 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 RNU6-282P-201ENST00000365357 103 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 USP9YP27-201ENST00000418455 438 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 OR1AA1P-201ENST00000419597 916 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AL139413.1-201ENST00000421309 217 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 MTCO1P20-201ENST00000425366 358 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 HMGN2P31-201ENST00000432430 273 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 UBE2V1P13-201ENST00000436983 439 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 HMGB1P12-201ENST00000438594 598 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 RPL23AP20-201ENST00000447965 421 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 MTND3P10-201ENST00000450967 341 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC104308.1-201ENST00000454621 333 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 U3.44-201ENST00000458938 192 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 RPS4XP10-201ENST00000465034 731 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 RPS4XP13-201ENST00000483219 789 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC010587.1-201ENST00000505809 469 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC004062.1-201ENST00000509926 645 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 RNU2-27P-201ENST00000516185 142 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC107934.1-201ENST00000522215 217 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AP003497.1-201ENST00000528472 562 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AP000907.2-201ENST00000530827 353 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 OR5B10P-201ENST00000532869 642 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC026333.2-201ENST00000542164 106 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC007458.1-201ENST00000542812 373 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 SETP7-201ENST00000552169 453 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 UBE2L4-201ENST00000587688 464 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 SNORA51-201ENST00000606420 132 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AP001330.5-201ENST00000607176 411 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 RNVU1-4-201ENST00000612985 164 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC022149.2-201ENST00000621061 203 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AL357559.1-201ENST00000622228 274 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AL158801.5-201ENST00000623123 465 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC058791.1-201ENST00000608412 3198 ntBASIC4.23□□□□□ -1.73
VPS53Q5VIR6 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS53Q5VIR6 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 OR5J1P-201ENST00000313544 939 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 Y_RNA.89-201ENST00000363031 102 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 MIR490-201ENST00000384865 128 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 MIR670-201ENST00000390142 98 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC093578.1-201ENST00000415219 368 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC019097.1-201ENST00000424783 735 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 CYCSP43-201ENST00000438233 310 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 USP9YP15-201ENST00000442391 422 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AL671855.1-201ENST00000446875 1203 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 DPPA3P1-201ENST00000448050 469 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC007967.1-201ENST00000455422 1159 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 snoU13.4-201ENST00000458916 104 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 RN7SL594P-201ENST00000470590 287 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC007537.2-201ENST00000472093 511 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC025518.1-201ENST00000479856 347 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC055855.1-201ENST00000489563 579 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AP002812.1-201ENST00000495378 474 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC117522.1-201ENST00000509821 380 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 RNU6-1095P-201ENST00000516148 108 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 IGKV2D-19-201ENST00000523346 262 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 ZNF192P1-203ENST00000565888 810 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 MIR3167-201ENST00000579623 85 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC008752.3-201ENST00000588113 712 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC006116.10-201ENST00000591836 581 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC012669.1-201ENST00000603209 283 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms