Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
USP39Q53GS9 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.3□□□□□ -1.72
USP39Q53GS9 OR4K8P-201ENST00000578842 1048 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
USP39Q53GS9 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.3□□□□□ -1.72
USP39Q53GS9 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP39Q53GS9 uc_338.12-201ENST00000616344 181 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AC004825.2-201ENST00000616634 455 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AL138721.1-201ENST00000616756 179 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 RMST_9.1-201ENST00000619945 193 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP39Q53GS9 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP39Q53GS9 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP39Q53GS9 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP39Q53GS9 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP39Q53GS9 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.3□□□□□ -1.72
USP39Q53GS9 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP39Q53GS9 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.3□□□□□ -1.72
USP39Q53GS9 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.29□□□□□ -1.72
USP39Q53GS9 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.29□□□□□ -1.72
USP39Q53GS9 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.29□□□□□ -1.72
USP39Q53GS9 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.29□□□□□ -1.72
USP39Q53GS9 RNU6-552P-201ENST00000362869 119 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 Y_RNA.530-201ENST00000384587 101 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 MT-TG-201ENST00000387429 68 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 MIR454-201ENST00000390180 115 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 MIR548F5-201ENST00000408421 86 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 RN7SKP158-201ENST00000410453 326 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 SNORA74C-2-201ENST00000411179 201 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 RPL31P45-201ENST00000419532 356 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.29□□□□□ -1.72
USP39Q53GS9 CBX3P6-201ENST00000430257 527 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 FTH1P6-201ENST00000430768 320 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.29□□□□□ -1.72
USP39Q53GS9 RPS29P7-201ENST00000439662 171 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.29□□□□□ -1.72
USP39Q53GS9 SNORD108-201ENST00000459332 71 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 RPL23AP41-201ENST00000484754 458 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 RN7SL283P-201ENST00000489055 303 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.29□□□□□ -1.72
USP39Q53GS9 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.29□□□□□ -1.72
USP39Q53GS9 NCAPGP2-201ENST00000557911 754 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 MIR4680-201ENST00000580906 66 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 AC008739.3-201ENST00000603262 127 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 AL022099.1-201ENST00000604551 712 ntBASIC4.29□□□□□ -1.72
USP39Q53GS9 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
USP39Q53GS9 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
USP39Q53GS9 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.29□□□□□ -1.72
USP39Q53GS9 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.29□□□□□ -1.72
USP39Q53GS9 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
USP39Q53GS9 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.29□□□□□ -1.72
USP39Q53GS9 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP39Q53GS9 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
USP39Q53GS9 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.28□□□□□ -1.72
USP39Q53GS9 ELL2P4-201ENST00000446870 1376 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP39Q53GS9 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP39Q53GS9 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
USP39Q53GS9 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP39Q53GS9 RNU1-108P-201ENST00000362556 161 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 RNA5SP502-201ENST00000362694 119 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 RNU5E-8P-201ENST00000363502 116 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 CISD1P1-201ENST00000393907 327 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 RNU6-985P-201ENST00000410182 104 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 CYCSP10-201ENST00000417973 294 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.28□□□□□ -1.72
USP39Q53GS9 TIMM9P1-201ENST00000436122 256 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AC105402.2-201ENST00000438503 358 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.28□□□□□ -1.72
USP39Q53GS9 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.28□□□□□ -1.72
USP39Q53GS9 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.28□□□□□ -1.72
USP39Q53GS9 RPS26P28-201ENST00000470806 348 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.28□□□□□ -1.72
USP39Q53GS9 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.28□□□□□ -1.72
USP39Q53GS9 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.28□□□□□ -1.72
USP39Q53GS9 IFITM8P-201ENST00000522529 394 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 PTP4A1P6-201ENST00000531034 478 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.28□□□□□ -1.72
USP39Q53GS9 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.28□□□□□ -1.72
USP39Q53GS9 RPL23AP97-201ENST00000568955 471 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 MTND6P33-201ENST00000571794 183 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.28□□□□□ -1.72
USP39Q53GS9 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.28□□□□□ -1.72
USP39Q53GS9 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.28□□□□□ -1.72
USP39Q53GS9 AL606490.9-201ENST00000603331 271 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AC024220.1-201ENST00000603675 484 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AL670379.11-201ENST00000604059 253 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AL670379.10-201ENST00000604330 253 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AL354984.3-201ENST00000604803 325 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AL160290.3-201ENST00000604869 165 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AL670379.12-201ENST00000605291 253 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms