Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL031667.1-201ENST00000440222 725 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC008264.1-201ENST00000447612 367 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 TPTE2P5-203ENST00000458118 728 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 RPS27P29-201ENST00000463110 252 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 RPL21P104-201ENST00000464143 478 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 RN7SL442P-201ENST00000473804 320 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 Y_RNA.672-201ENST00000516289 104 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 RNU2-46P-201ENST00000517038 113 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 RN7SKP289-201ENST00000517244 295 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC107934.1-201ENST00000522215 217 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AP000857.1-201ENST00000532151 543 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC005476.1-201ENST00000554427 397 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AL133153.1-201ENST00000557756 303 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 MIR4528-201ENST00000577763 90 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 MTND1P15-201ENST00000579262 949 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC015917.1-201ENST00000579654 510 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC012443.1-201ENST00000605605 231 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC098614.4-201ENST00000607601 462 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 BX664608.1-201ENST00000610519 487 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AC091953.2-201ENST00000623979 160 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.53□□□□□ -1.84
USP41Q3LFD5 AL513302.2-201ENST00000562313 1842 ntBASIC3.53□□□□□ -1.84
USP41Q3LFD5 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
USP41Q3LFD5 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP41Q3LFD5 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 MIR30E-201ENST00000362104 92 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 RNU5A-8P-201ENST00000364102 114 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP41Q3LFD5 RNU6-278P-201ENST00000390945 109 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 RNU6-754P-201ENST00000391166 107 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 RNU6-248P-201ENST00000410720 107 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 UBE2FP1-201ENST00000416536 447 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP41Q3LFD5 RPS15AP12-201ENST00000419498 388 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 TIMM9P1-201ENST00000436122 256 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 HMGB1P12-201ENST00000438594 598 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 RNU7-59P-201ENST00000459101 61 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 KLF3P2-201ENST00000465138 268 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 RPL27AP5-201ENST00000469428 449 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC021205.2-201ENST00000480069 347 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 RPS15AP36-201ENST00000492022 382 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 AL845331.3-202ENST00000562856 261 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AGGF1P4-201ENST00000568249 801 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC087683.1-201ENST00000591187 441 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 KC877982.1-201ENST00000602313 470 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC004067.1-201ENST00000608733 700 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC090425.2-201ENST00000608818 501 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC104073.3-201ENST00000610942 955 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AL162274.2-201ENST00000614406 332 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AL355810.1-201ENST00000614629 552 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP41Q3LFD5 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.52□□□□□ -1.85
USP41Q3LFD5 AP001148.1-201ENST00000624124 2359 ntBASIC3.52□□□□□ -1.85
USP41Q3LFD5 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP41Q3LFD5 AC009812.4-201ENST00000569134 1805 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.51□□□□□ -1.85
USP41Q3LFD5 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP41Q3LFD5 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP41Q3LFD5 DDX10P1-201ENST00000448545 1933 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP41Q3LFD5 SNORD116-4-201ENST00000384733 96 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 RNU6-195P-201ENST00000411352 109 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 MTCO3P41-201ENST00000414801 328 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 AC007390.1-201ENST00000415722 356 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.51□□□□□ -1.85
USP41Q3LFD5 AC019097.1-201ENST00000424783 735 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.51□□□□□ -1.85
USP41Q3LFD5 ISCA1P6-201ENST00000427740 390 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 AL158071.1-201ENST00000430315 461 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 USP9YP14-201ENST00000430663 563 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 AC073614.1-201ENST00000438690 650 ntBASIC3.51□□□□□ -1.85
USP41Q3LFD5 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms