Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RN7SKP298-201ENST00000515950 94 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RNU6-64P-201ENST00000517119 105 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 MIR3945-201ENST00000581853 98 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 MIR4672-201ENST00000583126 81 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AC004223.2-201ENST00000590309 544 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AL136363.2-201ENST00000604173 851 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RMST_8.1-201ENST00000610287 165 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 SNHG22-203ENST00000617833 660 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AC072046.2-201ENST00000618366 268 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 MIR7153-201ENST00000637758 57 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC006504.1-201ENST00000562493 3666 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AL035425.3-201ENST00000564206 4996 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 RNU5E-1-201ENST00000362477 120 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 RNU6-511P-201ENST00000363496 107 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 SNORA5B-201ENST00000363786 132 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 RNY4P34-201ENST00000364779 95 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 DEFB109C-201ENST00000382575 264 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 DEFB109B-201ENST00000382656 264 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 HLFP1-201ENST00000402375 499 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 TXNP7-201ENST00000406296 293 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 RPL5P18-201ENST00000406671 891 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 RPL21P24-201ENST00000413752 448 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 HMGB3P23-201ENST00000414981 585 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 MTND3P17-201ENST00000416968 344 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 OOSP1P1-201ENST00000423265 274 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC002075.2-201ENST00000425207 252 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 USP12PX-201ENST00000432383 1057 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 TXNP1-201ENST00000441872 371 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC025750.2-201ENST00000442609 450 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AL136380.1-201ENST00000447970 162 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 RPL9P32-201ENST00000464118 620 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 S100A11P2-201ENST00000467589 312 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC084198.1-201ENST00000477747 402 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 KCTD9P5-201ENST00000504141 1170 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 RAC1P2-201ENST00000511164 579 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 RNA5SP208-201ENST00000516156 78 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 MTCO2P4-201ENST00000517968 247 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC011979.2-201ENST00000527568 352 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 OR4H12P-201ENST00000556269 907 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 MIR3186-201ENST00000577404 85 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AP002826.1-201ENST00000608835 315 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC084782.3-201ENST00000612282 578 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC092628.2-201ENST00000622492 339 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC095031.1-201ENST00000623685 672 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC058791.1-201ENST00000608412 3198 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 AC093908.1-201ENST00000623125 8092 ntBASIC3.47□□□□□ -1.85
COL28A1Q2UY09 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL28A1Q2UY09 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
COL28A1Q2UY09 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 OR1S2-201ENST00000302592 978 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 MIR449A-201ENST00000362113 91 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 RNU5A-1-201ENST00000362698 116 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 U3.11-201ENST00000364476 212 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms