Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
FOXA1P55317 snoZ40.1-201ENST00000364540 72 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA1P55317 RNU6-1257P-201ENST00000384625 110 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 MIR627-201ENST00000384979 97 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
FOXA1P55317 RNU6-298P-201ENST00000390888 96 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 SNORA11.4-201ENST00000408823 129 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC007435.1-201ENST00000421086 415 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC027124.2-201ENST00000428249 105 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AL590233.1-201ENST00000430017 456 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA1P55317 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA1P55317 USP9YP22-201ENST00000438971 294 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.99□□□□□ -2.09
FOXA1P55317 DPPA3P1-201ENST00000448050 469 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AL353691.1-201ENST00000451332 387 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 HSPE1P6-201ENST00000479457 291 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.99□□□□□ -2.09
FOXA1P55317 TMEM251P1-201ENST00000503717 318 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.99□□□□□ -2.09
FOXA1P55317 RNU1-41P-201ENST00000516161 162 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 RN7SKP31-201ENST00000516354 278 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 RNU1-48P-201ENST00000516400 162 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 RNU1-40P-201ENST00000516816 164 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 RNU1-97P-201ENST00000516872 164 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA1P55317 SUB1P1-201ENST00000524415 382 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA1P55317 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.99□□□□□ -2.09
FOXA1P55317 AL512310.1-201ENST00000548639 172 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA1P55317 OR4K8P-201ENST00000578842 1048 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA1P55317 MIR4637-201ENST00000582405 84 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC002984.1-201ENST00000591692 448 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA1P55317 AC009314.1-201ENST00000603871 304 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC136601.2-201ENST00000604356 474 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 NUTF2P8-201ENST00000604593 363 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AL121917.1-203ENST00000605534 577 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AC069545.1-201ENST00000605671 358 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AL138955.1-201ENST00000622881 1040 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 AL356266.1-201ENST00000623311 483 ntBASIC1.99□□□□□ -2.09
FOXA1P55317 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA1P55317 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA1P55317 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA1P55317 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA1P55317 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA1P55317 MTND4P35-201ENST00000604257 1375 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC009812.4-201ENST00000569134 1805 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 ELF2P3-201ENST00000445099 1506 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AL139276.1-201ENST00000311910 1001 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 DHFRP6-201ENST00000401776 268 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC007064.1-201ENST00000412238 351 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
FOXA1P55317 BEND7P1-201ENST00000422058 457 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC024082.2-201ENST00000434771 238 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.98□□□□□ -2.09
FOXA1P55317 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA1P55317 TRGVB-201ENST00000453257 471 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 MTCO3P11-201ENST00000455103 774 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC069528.1-202ENST00000482888 637 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC090453.1-201ENST00000495560 436 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA1P55317 RNU6-1225P-201ENST00000516336 65 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA1P55317 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA1P55317 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA1P55317 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA1P55317 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA1P55317 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC1.98□□□□□ -2.09
FOXA1P55317 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA1P55317 HSPE1P3-201ENST00000559254 309 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.98□□□□□ -2.09
FOXA1P55317 AC015688.2-201ENST00000584523 262 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 VN1R78P-201ENST00000597393 564 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC112220.2-201ENST00000605513 533 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC024060.1-201ENST00000607052 494 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC097504.2-201ENST00000608088 454 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC087241.4-201ENST00000612441 480 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC023158.2-201ENST00000614876 543 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AC025588.4-201ENST00000615802 908 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 AL138880.2-201ENST00000616214 239 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
FOXA1P55317 ZNF519P1-201ENST00000449011 1626 ntBASIC1.98□□□□□ -2.09
FOXA1P55317 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
FOXA1P55317 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
FOXA1P55317 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA1P55317 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA1P55317 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA1P55317 CDR1-202ENST00000625883 1485 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA1P55317 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA1P55317 Y_RNA.408-201ENST00000383987 102 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 RNA5SP252-201ENST00000391131 119 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AL356131.1-201ENST00000405826 414 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA1P55317 MRPS36P1-201ENST00000421291 307 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 GTF2IP3-201ENST00000433887 494 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms