Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MIR4278-201ENST00000636094 69 ntBASIC2.59□□□□□ -2
COL4A4P53420 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.59□□□□□ -2
COL4A4P53420 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL4A4P53420 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL4A4P53420 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL4A4P53420 FRG1BP-201ENST00000278882 761 ntBASIC2.58□□□□□ -2
COL4A4P53420 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
COL4A4P53420 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL4A4P53420 Y_RNA.140-201ENST00000363474 103 ntBASIC2.58□□□□□ -2
COL4A4P53420 snoZ40.1-201ENST00000364540 72 ntBASIC2.58□□□□□ -2
COL4A4P53420 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.58□□□□□ -2
COL4A4P53420 Y_RNA.465-201ENST00000384293 102 ntBASIC2.58□□□□□ -2
COL4A4P53420 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.58□□□□□ -2
COL4A4P53420 AL024474.1-201ENST00000404655 591 ntBASIC2.58□□□□□ -2
COL4A4P53420 AL512430.2-201ENST00000406786 339 ntBASIC2.58□□□□□ -2
COL4A4P53420 RNU2-17P-201ENST00000410290 190 ntBASIC2.58□□□□□ -2
COL4A4P53420 RNA5SP344-201ENST00000411081 104 ntBASIC2.58□□□□□ -2
COL4A4P53420 XKRYP4-201ENST00000414395 483 ntBASIC2.58□□□□□ -2
COL4A4P53420 USP9YP20-201ENST00000419224 558 ntBASIC2.58□□□□□ -2
COL4A4P53420 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.58□□□□□ -2
COL4A4P53420 UBE2V1P8-201ENST00000437166 265 ntBASIC2.58□□□□□ -2
COL4A4P53420 AL121601.2-201ENST00000438019 707 ntBASIC2.58□□□□□ -2
COL4A4P53420 USP9YP29-201ENST00000445112 563 ntBASIC2.58□□□□□ -2
COL4A4P53420 MTND5P20-201ENST00000448677 143 ntBASIC2.58□□□□□ -2
COL4A4P53420 XKRYP5-201ENST00000449659 483 ntBASIC2.58□□□□□ -2
COL4A4P53420 FGF7P6-202ENST00000451282 293 ntBASIC2.58□□□□□ -2
COL4A4P53420 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC2.58□□□□□ -2
COL4A4P53420 RN7SKP210-201ENST00000459176 261 ntBASIC2.58□□□□□ -2
COL4A4P53420 RPL23AP70-201ENST00000483361 460 ntBASIC2.58□□□□□ -2
COL4A4P53420 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.58□□□□□ -2
COL4A4P53420 AC023050.1-201ENST00000498198 304 ntBASIC2.58□□□□□ -2
COL4A4P53420 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.58□□□□□ -2
COL4A4P53420 AP004247.1-201ENST00000531556 1289 ntBASIC2.58□□□□□ -2
COL4A4P53420 AL121579.1-201ENST00000555129 305 ntBASIC2.58□□□□□ -2
COL4A4P53420 ANP32BP3-201ENST00000559213 706 ntBASIC2.58□□□□□ -2
COL4A4P53420 AC084757.1-201ENST00000559987 490 ntBASIC2.58□□□□□ -2
COL4A4P53420 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.58□□□□□ -2
COL4A4P53420 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL4A4P53420 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.58□□□□□ -2
COL4A4P53420 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.58□□□□□ -2
COL4A4P53420 AL356055.1-201ENST00000602528 446 ntBASIC2.58□□□□□ -2
COL4A4P53420 C8orf59P2-201ENST00000603441 271 ntBASIC2.58□□□□□ -2
COL4A4P53420 AC091805.2-201ENST00000603848 235 ntBASIC2.58□□□□□ -2
COL4A4P53420 AL031281.1-201ENST00000604049 488 ntBASIC2.58□□□□□ -2
COL4A4P53420 AL592221.1-201ENST00000605266 382 ntBASIC2.58□□□□□ -2
COL4A4P53420 NDUFA8P1-201ENST00000605525 367 ntBASIC2.58□□□□□ -2
COL4A4P53420 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.58□□□□□ -2
COL4A4P53420 AC008498.1-201ENST00000613012 531 ntBASIC2.58□□□□□ -2
COL4A4P53420 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.58□□□□□ -2
COL4A4P53420 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC2.58□□□□□ -2
COL4A4P53420 MIR8070-201ENST00000616510 88 ntBASIC2.58□□□□□ -2
COL4A4P53420 AC073569.3-201ENST00000619055 682 ntBASIC2.58□□□□□ -2
COL4A4P53420 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.58□□□□□ -2
COL4A4P53420 AC069528.2-201ENST00000624849 1991 ntBASIC2.58□□□□□ -2
COL4A4P53420 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
COL4A4P53420 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC2.58□□□□□ -2
COL4A4P53420 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC2.58□□□□□ -2
COL4A4P53420 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.57□□□□□ -2
COL4A4P53420 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.57□□□□□ -2
COL4A4P53420 Y_RNA.813-201ENST00000364639 102 ntBASIC2.57□□□□□ -2
COL4A4P53420 RNU6-413P-201ENST00000384115 107 ntBASIC2.57□□□□□ -2
COL4A4P53420 MIR548F1-201ENST00000408667 84 ntBASIC2.57□□□□□ -2
COL4A4P53420 AL161449.1-201ENST00000414531 1199 ntBASIC2.57□□□□□ -2
COL4A4P53420 RPS7P9-201ENST00000414704 586 ntBASIC2.57□□□□□ -2
COL4A4P53420 MTCYBP38-201ENST00000417160 1123 ntBASIC2.57□□□□□ -2
COL4A4P53420 ISCA1P1-201ENST00000426679 387 ntBASIC2.57□□□□□ -2
COL4A4P53420 MTND1P14-201ENST00000427400 950 ntBASIC2.57□□□□□ -2
COL4A4P53420 TRIM60P18-201ENST00000441518 828 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC104389.3-201ENST00000445629 235 ntBASIC2.57□□□□□ -2
COL4A4P53420 RNU6-956P-201ENST00000458868 103 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC108729.3-201ENST00000513484 108 ntBASIC2.57□□□□□ -2
COL4A4P53420 RNU6-314P-201ENST00000516574 104 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC2.57□□□□□ -2
COL4A4P53420 AP003392.2-201ENST00000527269 208 ntBASIC2.57□□□□□ -2
COL4A4P53420 NDUFA5P6-201ENST00000542110 379 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.57□□□□□ -2
COL4A4P53420 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.57□□□□□ -2
COL4A4P53420 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.57□□□□□ -2
COL4A4P53420 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.57□□□□□ -2
COL4A4P53420 AC011260.1-201ENST00000578420 472 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC012254.4-201ENST00000588843 273 ntBASIC2.57□□□□□ -2
COL4A4P53420 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.57□□□□□ -2
COL4A4P53420 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.57□□□□□ -2
COL4A4P53420 WISP1-OT1-201ENST00000602893 642 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC006254.3-201ENST00000603353 884 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC025449.1-201ENST00000603896 529 ntBASIC2.57□□□□□ -2
COL4A4P53420 AL158211.4-201ENST00000606988 584 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC013476.2-201ENST00000614456 459 ntBASIC2.57□□□□□ -2
COL4A4P53420 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.57□□□□□ -2
COL4A4P53420 AC092794.2-201ENST00000620933 563 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.57□□□□□ -2
COL4A4P53420 AC073348.1-201ENST00000623002 331 ntBASIC2.57□□□□□ -2
COL4A4P53420 MTND5P23-201ENST00000430812 1655 ntBASIC2.57□□□□□ -2
COL4A4P53420 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC011477.1-204ENST00000623416 1325 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC000367.1-201ENST00000452711 1766 ntBASIC2.57□□□□□ -2
COL4A4P53420 CUL4AP1-201ENST00000514750 1863 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC093775.1-201ENST00000624154 1868 ntBASIC2.57□□□□□ -2
COL4A4P53420 RNU6-1159P-201ENST00000362933 107 ntBASIC2.57□□□□□ -2
COL4A4P53420 Y_RNA.359-201ENST00000365498 102 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms