Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC080013.6-201ENST00000606185 215 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 OR2AS2P-201ENST00000606902 342 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC135507.1-201ENST00000607214 561 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC245008.1-201ENST00000608123 476 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AL355472.4-201ENST00000610233 626 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC073114.1-201ENST00000612027 490 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AL592295.2-201ENST00000612578 206 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC027807.2-201ENST00000616099 408 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC108479.2-201ENST00000617314 601 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC009159.1-201ENST00000618386 642 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AL159972.1-201ENST00000625150 448 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC005832.2-201ENST00000538921 1430 ntBASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.15□□□□□ -1.91
CCDC3Q9BQI4 AC058791.1-201ENST00000608412 3198 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 FGF7P2-201ENST00000332473 296 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 RNU1-70P-201ENST00000362618 164 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 RN7SKP285-201ENST00000410137 318 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 RNA5SP129-201ENST00000410276 118 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 Y_RNA.598-201ENST00000410480 95 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC079780.1-201ENST00000428259 207 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 OR4K11P-201ENST00000431829 904 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 NEK4P1-201ENST00000433383 879 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 CST9LP2-201ENST00000437612 320 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 RPL26P6-201ENST00000440913 438 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 RPS4XP2-201ENST00000458402 793 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 RNU7-59P-201ENST00000459101 61 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC080014.1-201ENST00000496877 1201 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC010265.1-201ENST00000513509 211 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 RPL12P22-201ENST00000519073 490 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC022080.3-201ENST00000544433 482 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AL391156.1-201ENST00000554965 554 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AP005136.1-201ENST00000579765 429 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 COX6CP3-201ENST00000580869 223 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC112191.3-201ENST00000604371 277 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC008121.2-201ENST00000614647 523 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC138932.5-201ENST00000617759 563 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AL603839.4-201ENST00000624658 1005 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC019226.1-201ENST00000625666 515 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 AP003399.1-201ENST00000637534 361 ntBASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC3Q9BQI4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC090740.1-201ENST00000623193 2262 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 RNU6-50P-201ENST00000362356 103 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 U3.4-201ENST00000363352 213 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 RNU1-140P-201ENST00000365040 165 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 MTCYBP36-201ENST00000404146 440 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 RPL5P18-201ENST00000406671 891 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 MIR1290-201ENST00000408735 78 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 RNU6-55P-201ENST00000411092 107 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 RNU6-954P-201ENST00000411355 107 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC024082.2-201ENST00000434771 238 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 MTND1P28-201ENST00000435623 950 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 PGBD4P3-201ENST00000440731 581 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 ST13P20-201ENST00000447996 1065 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 TPT1P14-201ENST00000448018 505 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 USP9YP12-201ENST00000450481 570 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AL590365.1-201ENST00000450788 243 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC006539.3-201ENST00000454258 129 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 MTCO2P18-201ENST00000457151 658 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC135721.1-201ENST00000497954 479 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AP003467.2-201ENST00000520175 319 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC100870.1-201ENST00000522035 505 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AP000857.1-201ENST00000532151 543 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 ZNF519P3-201ENST00000557158 1032 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AL356432.3-201ENST00000568952 465 ntBASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC3Q9BQI4 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms