Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 KC877373.1-201ENST00000479066 408 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC022447.3-201ENST00000506865 495 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC117522.3-201ENST00000507974 584 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 MTCO1P47-201ENST00000523889 1271 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC010653.1-201ENST00000571108 881 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC060771.1-201ENST00000582031 164 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC011471.1-201ENST00000585766 187 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC006504.3-201ENST00000586818 523 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 ZNF861P-201ENST00000588126 639 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AL158042.1-201ENST00000605338 460 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC107871.2-201ENST00000612894 502 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC010133.1-201ENST00000615809 842 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 Z99129.2-201ENST00000619967 314 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AC008669.1-201ENST00000565823 2178 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AL590004.2-201ENST00000404787 371 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 SNORD88.1-201ENST00000408684 91 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 MTCO1P17-201ENST00000411522 491 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 TXNL1P1-201ENST00000429528 554 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 RPL35AP22-201ENST00000436855 335 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 YWHAZP7-201ENST00000436906 631 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AC105272.1-201ENST00000438604 198 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 FGF7P5-201ENST00000441829 291 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 UBBP3-201ENST00000445497 241 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 WASF1P1-201ENST00000447560 1131 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AP000542.1-201ENST00000448473 371 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 RPS15AP36-201ENST00000492022 382 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AC138853.1-201ENST00000503549 823 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 HIGD1AP13-201ENST00000509878 289 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 MTCYBP43-201ENST00000513621 740 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AC091826.1-201ENST00000514065 313 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 SETP2-201ENST00000553886 926 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 UBE2L4-201ENST00000587688 464 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AF038458.1-201ENST00000588406 262 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AC112220.3-201ENST00000605502 502 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AC009974.1-201ENST00000608881 455 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 AL158801.5-201ENST00000623123 465 ntBASIC3.13□□□□□ -1.91
CCDC43Q96MW1 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC43Q96MW1 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC009902.3-201ENST00000606235 2172 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 RNU6-462P-201ENST00000362659 105 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 RNU1-105P-201ENST00000363470 161 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 MTCO2P8-201ENST00000412213 658 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AL513477.1-202ENST00000417061 214 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 ELOCP9-201ENST00000418624 239 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 MTCYBP3-201ENST00000445588 1137 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC096576.1-201ENST00000489014 359 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC023538.1-201ENST00000534576 736 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 ELOCP29-201ENST00000588193 334 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC002545.1-201ENST00000592511 181 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 RPL23AP78-201ENST00000599928 470 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AL035413.2-201ENST00000604801 525 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AL137843.1-201ENST00000605078 385 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC007619.2-201ENST00000605743 379 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC093838.1-201ENST00000613014 469 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AP000484.1-201ENST00000620067 1252 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 UCA1.1-201ENST00000620952 75 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 MTND1P37-201ENST00000636562 264 ntBASIC3.12□□□□□ -1.91
CCDC43Q96MW1 AC106754.1-201ENST00000562632 1513 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AL672167.1-206ENST00000356293 943 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 MIR26A1-201ENST00000362205 77 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 SNORA5B-201ENST00000363786 132 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 SNORA4.1-201ENST00000364263 144 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 RNU6-217P-201ENST00000384164 104 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 MIR181A2-201ENST00000384863 110 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms