Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNORD58B-201ENST00000607313 66 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 HMGB1P24-202ENST00000615653 685 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC010205.1-201ENST00000616668 449 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 MIR6837-201ENST00000620884 64 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AL606534.2-204ENST00000635008 178 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AL022311.1-201ENST00000623726 19416 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AL138820.1-201ENST00000617901 5305 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 U3.2-201ENST00000362981 210 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 RN7SKP162-201ENST00000363605 345 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.176-201ENST00000363815 109 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 RNU5E-7P-201ENST00000365290 117 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AL117339.3-201ENST00000418733 162 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AC108075.1-201ENST00000424692 529 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 MTCYBP9-201ENST00000431021 303 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 NDUFB4P6-201ENST00000436819 366 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 RNU7-169P-201ENST00000459456 61 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 FTH1P2-201ENST00000466086 412 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 MTCO2P24-201ENST00000515611 426 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AC027308.1-201ENST00000517993 110 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AP005902.1-201ENST00000521358 186 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 MIR4782-201ENST00000577987 79 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 MIR3149-201ENST00000584629 83 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 MIR4443-201ENST00000585052 53 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AL158827.2-201ENST00000602494 330 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AL158196.1-201ENST00000616786 434 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 AL691447.3-201ENST00000635020 330 ntBASIC4.06□□□□□ -1.76
CCDC140Q96MF4 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC140Q96MF4 NOL8P1-201ENST00000508336 3529 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 U3.3-201ENST00000362986 216 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 RNU6-658P-201ENST00000384606 106 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.577-201ENST00000384794 101 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AL591034.2-201ENST00000402839 359 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AL391361.1-201ENST00000405580 489 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC093655.2-201ENST00000425735 631 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AL159987.2-201ENST00000432754 307 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 RPL30P5-201ENST00000494923 336 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 RNU1-103P-201ENST00000516502 125 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC109479.2-201ENST00000517842 174 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 IGLV2-28-201ENST00000520681 304 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC012339.2-201ENST00000523996 453 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 ZNF192P1-203ENST00000565888 810 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC006006.1-201ENST00000603082 144 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AL139395.1-201ENST00000603662 160 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC006023.2-201ENST00000609916 167 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 FTX_3.1-201ENST00000610451 147 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 MIR1244-1-201ENST00000612829 85 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AC118658.2-201ENST00000618697 459 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms