Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 MTCO2P15-201ENST00000532655 656 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC015917.1-201ENST00000579654 510 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC138761.3-201ENST00000579993 334 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 MIR544B-201ENST00000582372 78 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 OR1M4P-201ENST00000589199 287 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC016597.2-201ENST00000613256 341 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 SNHG22-203ENST00000617833 660 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC012150.2-201ENST00000621300 544 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC103706.2-201ENST00000638080 240 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VMP1Q96GC9 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC135776.4-201ENST00000624300 1904 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 RNU6-931P-201ENST00000363850 107 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC119751.3-201ENST00000399720 670 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AL512633.1-201ENST00000399931 655 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 RPL7P8-201ENST00000411964 730 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 HMGN2P35-201ENST00000412164 270 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 AL356968.1-201ENST00000416622 474 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 ELOCP14-201ENST00000428070 331 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 ELOCP7-201ENST00000439968 331 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 RN7SL75P-201ENST00000461926 281 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC091153.1-201ENST00000466297 402 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 RPS15AP34-201ENST00000487776 387 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 RNA5SP217-201ENST00000515959 91 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 SCARNA20.6-201ENST00000517251 106 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 COX6CP5-201ENST00000527162 228 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AP004247.1-201ENST00000531556 1289 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 AL049838.1-201ENST00000563647 981 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC021171.1-201ENST00000603137 706 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC004805.2-201ENST00000605382 482 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC073657.2-201ENST00000605661 303 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC096577.2-201ENST00000611455 153 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC140725.3-201ENST00000616193 880 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 SNORD39.4-201ENST00000620099 78 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 AC099506.2-201ENST00000623074 221 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 OR4G3P-201ENST00000633500 913 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.1□□□□□ -1.91
VMP1Q96GC9 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VMP1Q96GC9 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
VMP1Q96GC9 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VMP1Q96GC9 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
VMP1Q96GC9 AC092447.7-201ENST00000422212 1621 ntBASIC3.09□□□□□ -1.91
VMP1Q96GC9 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.09□□□□□ -1.91
VMP1Q96GC9 RNU6-433P-201ENST00000363216 104 ntBASIC3.09□□□□□ -1.91
VMP1Q96GC9 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VMP1Q96GC9 RNA5SP120-201ENST00000410900 112 ntBASIC3.09□□□□□ -1.91
VMP1Q96GC9 AC023141.4-201ENST00000412031 328 ntBASIC3.09□□□□□ -1.91
VMP1Q96GC9 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VMP1Q96GC9 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.09□□□□□ -1.91
VMP1Q96GC9 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.09□□□□□ -1.91
VMP1Q96GC9 MTND1P32-201ENST00000433043 938 ntBASIC3.09□□□□□ -1.91
VMP1Q96GC9 Z80107.1-201ENST00000436830 412 ntBASIC3.09□□□□□ -1.91
VMP1Q96GC9 CR769776.1-201ENST00000441254 787 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms