Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SKA1Q96BD8 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
SKA1Q96BD8 PABPC1P9-201ENST00000426076 1612 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 SNORD9-201ENST00000362566 104 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 RNU6-553P-201ENST00000364047 96 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 RNA5SP267-201ENST00000364893 126 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 RPL7P60-201ENST00000397636 735 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 RNU4-72P-201ENST00000410754 173 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 RNU6-920P-201ENST00000410926 92 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 RPS7P13-201ENST00000413955 498 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC097713.2-201ENST00000430199 356 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 MED14P1-201ENST00000430517 648 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 HMGB1P27-201ENST00000431429 603 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC016696.1-201ENST00000446949 318 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC093392.2-201ENST00000450682 337 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC114797.1-201ENST00000514003 728 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC022616.6-201ENST00000520479 119 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 TRAV37-201ENST00000553906 342 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC145350.1-201ENST00000567426 208 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 U73023.1-201ENST00000603134 700 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC136601.2-201ENST00000604356 474 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AL603755.1-201ENST00000619504 163 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 AP003355.3-201ENST00000623465 114 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 FRG1KP-201ENST00000623592 341 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA1Q96BD8 AC119674.1-207ENST00000641355 633 ntBASIC3.6□□□□□ -1.83
SKA1Q96BD8 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SKA1Q96BD8 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SKA1Q96BD8 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SKA1Q96BD8 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SKA1Q96BD8 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SKA1Q96BD8 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SKA1Q96BD8 Y_RNA.245-201ENST00000364493 95 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 RNY3P13-201ENST00000365542 102 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 SNORD115.1-201ENST00000391109 76 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 RNA5SP354-201ENST00000391247 136 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 AL031577.2-201ENST00000404133 280 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 AC005019.1-201ENST00000436455 431 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 MTND1P30-201ENST00000441241 901 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 MTATP6P30-201ENST00000443540 664 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 ART2BP-201ENST00000453501 499 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 AC233702.1-201ENST00000482905 502 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 ARL4AP2-201ENST00000507378 601 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 FTX_3.1-201ENST00000610451 147 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 AL442067.2-201ENST00000614033 363 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 uc_338.12-201ENST00000616344 181 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 AC022149.2-201ENST00000621061 203 ntBASIC3.59□□□□□ -1.83
SKA1Q96BD8 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
SKA1Q96BD8 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SKA1Q96BD8 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
SKA1Q96BD8 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
SKA1Q96BD8 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.58□□□□□ -1.84
SKA1Q96BD8 AC068647.1-201ENST00000489539 2265 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 FTLP6-201ENST00000355274 422 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 MTCYBP36-201ENST00000404146 440 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 RNA5SP31-201ENST00000411144 127 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.58□□□□□ -1.84
SKA1Q96BD8 AC107081.1-201ENST00000414975 361 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 USP9YP13-201ENST00000417797 480 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 ATG3P1-201ENST00000419507 911 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.58□□□□□ -1.84
SKA1Q96BD8 RPS6P15-201ENST00000431996 751 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 FCF1P1-201ENST00000432690 571 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 AC093156.1-201ENST00000440382 670 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.58□□□□□ -1.84
SKA1Q96BD8 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.58□□□□□ -1.84
SKA1Q96BD8 AL590365.1-201ENST00000450788 243 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 RPF2P2-201ENST00000504693 896 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.58□□□□□ -1.84
SKA1Q96BD8 RAC1P5-201ENST00000512182 576 ntBASIC3.58□□□□□ -1.84
SKA1Q96BD8 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms