Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AP003497.1-201ENST00000528472 562 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 MTATP6P24-201ENST00000576835 677 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 MIR2682-201ENST00000580305 110 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC024153.1-201ENST00000603103 365 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AL356280.1-201ENST00000603614 379 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AL157392.4-201ENST00000609756 345 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 SDR42E1P2-201ENST00000614861 481 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 SCARNA15.3-201ENST00000626315 122 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 SCARNA4.1-201ENST00000628597 123 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 MIR7515-201ENST00000637837 67 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 GNG5P1-201ENST00000255500 204 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 RNU6-560P-201ENST00000364007 108 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 RNU6-432P-201ENST00000384196 109 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AL357075.1-201ENST00000404107 726 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 RNA5SP80-201ENST00000410475 111 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC096649.2-201ENST00000416186 393 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 USP9YP13-201ENST00000417797 480 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AL449283.1-202ENST00000418249 604 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC104389.3-201ENST00000445629 235 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AL358794.1-201ENST00000445689 381 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC233279.1-201ENST00000455300 423 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 DUXAP8-207ENST00000456786 622 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC105252.1-201ENST00000503089 286 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC020699.1-201ENST00000505161 445 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 NDUFB4P2-201ENST00000509515 391 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 RNU6-150P-201ENST00000516237 95 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 CYCSP2-201ENST00000558168 301 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC005951.2-201ENST00000576282 495 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 OR4K7P-201ENST00000580232 945 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC106052.1-201ENST00000608029 497 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AC009974.1-201ENST00000608881 455 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AL359198.2-201ENST00000611836 194 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AL138478.1-201ENST00000612252 832 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 AL162274.2-201ENST00000614406 332 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 MIR6733-201ENST00000635723 61 ntBASIC2.79□□□□□ -1.96
ZNF540Q8NDQ6 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 Y_RNA.548-201ENST00000384656 105 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 RNU6-114P-201ENST00000384704 105 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 SNORA48.2-201ENST00000390926 124 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AL451074.5-201ENST00000415894 435 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 MTCYBP38-201ENST00000417160 1123 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 BX119904.4-201ENST00000424402 301 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 ZYG11AP1-201ENST00000430329 837 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 OSTCP8-201ENST00000445117 448 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AL031313.1-201ENST00000448435 256 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 ELOCP23-201ENST00000452014 332 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC134050.1-201ENST00000495088 933 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC022447.3-201ENST00000506865 495 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AP002404.1-201ENST00000532005 451 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 MTND3P13-201ENST00000574391 343 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 MIR4509-3-201ENST00000578671 94 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 MIR4509-2-201ENST00000583920 94 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms