Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC022447.3-201ENST00000506865 495 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 POU5F1P7-201ENST00000508759 541 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 HSPE1P23-201ENST00000509838 286 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC006445.2-201ENST00000510061 472 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC118465.1-201ENST00000513820 1271 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 CASP1P1-201ENST00000526345 212 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC068587.4-201ENST00000533893 186 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
TNFRSF4P43489 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC024153.1-201ENST00000603103 365 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC024560.3-201ENST00000608482 349 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 RMST_8.1-201ENST00000610287 165 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 Z99129.2-201ENST00000619967 314 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC019226.1-201ENST00000625666 515 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 AC099063.3-201ENST00000642066 185 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 OR4G2P-202ENST00000641004 1759 ntBASIC2.96□□□□□ -1.94
TNFRSF4P43489 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
TNFRSF4P43489 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
TNFRSF4P43489 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
TNFRSF4P43489 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
TNFRSF4P43489 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
TNFRSF4P43489 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
TNFRSF4P43489 MIR423-201ENST00000362201 94 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 RNA5SP383-201ENST00000362934 120 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 SNORA18.3-201ENST00000384122 132 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 RNU6-754P-201ENST00000391166 107 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 MIR1305-201ENST00000408300 86 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 MRPL50P2-201ENST00000416821 482 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 MTND2P18-201ENST00000419962 1030 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 MTND4P20-201ENST00000424125 869 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC063976.3-201ENST00000426849 329 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 UBE2D3P1-201ENST00000436669 444 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
TNFRSF4P43489 RSU1P2-202ENST00000437884 485 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 MTCYBP3-201ENST00000445588 1137 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 KC877373.1-201ENST00000479066 408 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 SCARNA15.2-201ENST00000516409 127 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 SNORA64.4-201ENST00000516632 81 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 IGHV3-76-201ENST00000522465 295 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC007834.2-201ENST00000536310 343 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 AL133271.1-201ENST00000538229 291 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 OSBPL9P5-201ENST00000542581 171 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 ISCA1P3-201ENST00000577104 373 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 MIR4319-201ENST00000577285 85 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC060771.1-201ENST00000582031 164 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 MIR3609-201ENST00000582661 80 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 VN1R90P-201ENST00000595717 726 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 BNIP3P23-201ENST00000599655 511 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC015871.2-201ENST00000603605 948 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 HSPE1P7-201ENST00000604681 321 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC097468.3-201ENST00000607956 456 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC090132.2-201ENST00000615881 347 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC007671.2-201ENST00000637344 619 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC004944.1-201ENST00000517807 3059 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 AC110774.1-201ENST00000623567 2018 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.95□□□□□ -1.94
TNFRSF4P43489 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.95□□□□□ -1.94
TNFRSF4P43489 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 AC062016.1-201ENST00000355719 319 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 SNORA14A-201ENST00000364773 135 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 SNORA23-201ENST00000365128 182 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
TNFRSF4P43489 AC245291.1-201ENST00000419501 328 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 USP9YP26-201ENST00000421008 661 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 HSPE1P1-201ENST00000421494 318 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 NUP35P1-201ENST00000422734 947 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 TAAR7P-201ENST00000436141 242 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 UBE2FP3-201ENST00000436366 524 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 AL162389.1-201ENST00000449233 177 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 OR6C5P-201ENST00000452388 923 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms