Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPL23AP48-201ENST00000406913 488 ntBASIC4.17□□□□□ -1.74
MSX2P35548 RNU4-46P-201ENST00000410818 138 ntBASIC4.17□□□□□ -1.74
MSX2P35548 SNORA74C-2-201ENST00000411179 201 ntBASIC4.17□□□□□ -1.74
MSX2P35548 RNU6-954P-201ENST00000411355 107 ntBASIC4.17□□□□□ -1.74
MSX2P35548 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.17□□□□□ -1.74
MSX2P35548 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.17□□□□□ -1.74
MSX2P35548 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX2P35548 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.17□□□□□ -1.74
MSX2P35548 NRBF2P3-201ENST00000432731 865 ntBASIC4.17□□□□□ -1.74
MSX2P35548 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSX2P35548 AC108059.2-201ENST00000434626 151 ntBASIC4.17□□□□□ -1.74
MSX2P35548 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.17□□□□□ -1.74
MSX2P35548 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.17□□□□□ -1.74
MSX2P35548 ARL2BPP10-201ENST00000446487 531 ntBASIC4.17□□□□□ -1.74
MSX2P35548 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.17□□□□□ -1.74
MSX2P35548 AC135721.1-201ENST00000497954 479 ntBASIC4.17□□□□□ -1.74
MSX2P35548 PARP4P3-201ENST00000510265 317 ntBASIC4.17□□□□□ -1.74
MSX2P35548 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.17□□□□□ -1.74
MSX2P35548 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.17□□□□□ -1.74
MSX2P35548 RNU6-1092P-201ENST00000516955 87 ntBASIC4.17□□□□□ -1.74
MSX2P35548 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.17□□□□□ -1.74
MSX2P35548 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.17□□□□□ -1.74
MSX2P35548 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.17□□□□□ -1.74
MSX2P35548 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.17□□□□□ -1.74
MSX2P35548 AL117187.1-201ENST00000555482 181 ntBASIC4.17□□□□□ -1.74
MSX2P35548 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.17□□□□□ -1.74
MSX2P35548 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.17□□□□□ -1.74
MSX2P35548 VN1R107P-201ENST00000601784 209 ntBASIC4.17□□□□□ -1.74
MSX2P35548 AL049539.1-201ENST00000611964 459 ntBASIC4.17□□□□□ -1.74
MSX2P35548 AC091905.4-201ENST00000623432 202 ntBASIC4.17□□□□□ -1.74
MSX2P35548 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.17□□□□□ -1.74
MSX2P35548 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX2P35548 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
MSX2P35548 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX2P35548 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.17□□□□□ -1.74
MSX2P35548 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX2P35548 PNPT1P2-201ENST00000456768 2050 ntBASIC4.17□□□□□ -1.74
MSX2P35548 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSX2P35548 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSX2P35548 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.16□□□□□ -1.74
MSX2P35548 Y_RNA.482-201ENST00000384377 111 ntBASIC4.16□□□□□ -1.74
MSX2P35548 RNU6-331P-201ENST00000384724 107 ntBASIC4.16□□□□□ -1.74
MSX2P35548 MIR659-201ENST00000384963 97 ntBASIC4.16□□□□□ -1.74
MSX2P35548 MT-TC-201ENST00000387405 66 ntBASIC4.16□□□□□ -1.74
MSX2P35548 RNU6-550P-201ENST00000391057 101 ntBASIC4.16□□□□□ -1.74
MSX2P35548 EIF4E2P1-201ENST00000393781 255 ntBASIC4.16□□□□□ -1.74
MSX2P35548 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.16□□□□□ -1.74
MSX2P35548 AL139396.1-201ENST00000421137 167 ntBASIC4.16□□□□□ -1.74
MSX2P35548 PSMD10P3-201ENST00000437000 448 ntBASIC4.16□□□□□ -1.74
MSX2P35548 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.16□□□□□ -1.74
MSX2P35548 AC006466.1-201ENST00000438721 289 ntBASIC4.16□□□□□ -1.74
MSX2P35548 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.16□□□□□ -1.74
MSX2P35548 OR1H1P-201ENST00000448731 937 ntBASIC4.16□□□□□ -1.74
MSX2P35548 AC073850.1-201ENST00000449243 255 ntBASIC4.16□□□□□ -1.74
MSX2P35548 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.16□□□□□ -1.74
MSX2P35548 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.16□□□□□ -1.74
MSX2P35548 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.16□□□□□ -1.74
MSX2P35548 AC053481.1-201ENST00000467217 306 ntBASIC4.16□□□□□ -1.74
MSX2P35548 ST13P14-201ENST00000474095 734 ntBASIC4.16□□□□□ -1.74
MSX2P35548 RPS27P27-201ENST00000498779 255 ntBASIC4.16□□□□□ -1.74
MSX2P35548 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSX2P35548 AC025445.1-201ENST00000502728 300 ntBASIC4.16□□□□□ -1.74
MSX2P35548 AC104806.1-201ENST00000508720 308 ntBASIC4.16□□□□□ -1.74
MSX2P35548 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.16□□□□□ -1.74
MSX2P35548 COX6CP5-201ENST00000527162 228 ntBASIC4.16□□□□□ -1.74
MSX2P35548 AC008033.2-201ENST00000542626 177 ntBASIC4.16□□□□□ -1.74
MSX2P35548 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.16□□□□□ -1.74
MSX2P35548 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.16□□□□□ -1.74
MSX2P35548 SETP7-201ENST00000552169 453 ntBASIC4.16□□□□□ -1.74
MSX2P35548 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.16□□□□□ -1.74
MSX2P35548 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.16□□□□□ -1.74
MSX2P35548 MIR5690-201ENST00000583739 73 ntBASIC4.16□□□□□ -1.74
MSX2P35548 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.16□□□□□ -1.74
MSX2P35548 AC124312.5-201ENST00000604451 268 ntBASIC4.16□□□□□ -1.74
MSX2P35548 MIR6820-201ENST00000611508 62 ntBASIC4.16□□□□□ -1.74
MSX2P35548 DUSP12P1-201ENST00000612874 516 ntBASIC4.16□□□□□ -1.74
MSX2P35548 AC103705.1-201ENST00000619013 241 ntBASIC4.16□□□□□ -1.74
MSX2P35548 AP002799.1-201ENST00000623552 423 ntBASIC4.16□□□□□ -1.74
MSX2P35548 TPTE2P4-201ENST00000258589 1605 ntBASIC4.16□□□□□ -1.74
MSX2P35548 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.16□□□□□ -1.74
MSX2P35548 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSX2P35548 API5P2-201ENST00000397055 1498 ntBASIC4.16□□□□□ -1.74
MSX2P35548 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.16□□□□□ -1.74
MSX2P35548 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.16□□□□□ -1.74
MSX2P35548 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSX2P35548 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
MSX2P35548 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.15□□□□□ -1.74
MSX2P35548 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
MSX2P35548 Y_RNA.5-201ENST00000362334 102 ntBASIC4.15□□□□□ -1.75
MSX2P35548 RNA5SP305-201ENST00000362665 119 ntBASIC4.15□□□□□ -1.75
MSX2P35548 RNU6-1287P-201ENST00000362914 107 ntBASIC4.15□□□□□ -1.75
MSX2P35548 Y_RNA.135-201ENST00000363439 95 ntBASIC4.15□□□□□ -1.75
MSX2P35548 RNU6-339P-201ENST00000384310 107 ntBASIC4.15□□□□□ -1.75
MSX2P35548 RNU6-1060P-201ENST00000384664 107 ntBASIC4.15□□□□□ -1.75
MSX2P35548 AL360182.1-201ENST00000397433 468 ntBASIC4.15□□□□□ -1.75
MSX2P35548 MIR548F4-201ENST00000408515 105 ntBASIC4.15□□□□□ -1.75
MSX2P35548 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX2P35548 RAC1P6-201ENST00000423911 575 ntBASIC4.15□□□□□ -1.75
MSX2P35548 AC093106.2-201ENST00000428212 385 ntBASIC4.15□□□□□ -1.75
MSX2P35548 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms