Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG1P18858 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG1P18858 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG1P18858 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG1P18858 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
LIG1P18858 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIG1P18858 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIG1P18858 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIG1P18858 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LIG1P18858 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG1P18858 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
LIG1P18858 SNORD3E-201ENST00000362899 217 ntBASIC5.23□□□□□ -1.57
LIG1P18858 SNORA75B-201ENST00000384053 137 ntBASIC5.23□□□□□ -1.57
LIG1P18858 AL391417.1-201ENST00000404100 426 ntBASIC5.23□□□□□ -1.57
LIG1P18858 AL732292.1-201ENST00000426692 226 ntBASIC5.23□□□□□ -1.57
LIG1P18858 CALM2P2-201ENST00000428512 440 ntBASIC5.23□□□□□ -1.57
LIG1P18858 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.23□□□□□ -1.57
LIG1P18858 AC069285.2-201ENST00000440210 275 ntBASIC5.23□□□□□ -1.57
LIG1P18858 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LIG1P18858 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LIG1P18858 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG1P18858 AC116533.1-201ENST00000459748 321 ntBASIC5.23□□□□□ -1.57
LIG1P18858 RPL21P8-201ENST00000465083 535 ntBASIC5.23□□□□□ -1.57
LIG1P18858 RN7SL283P-201ENST00000489055 303 ntBASIC5.23□□□□□ -1.57
LIG1P18858 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
LIG1P18858 RN7SKP234-201ENST00000517173 224 ntBASIC5.23□□□□□ -1.57
LIG1P18858 CDH12P4-201ENST00000517835 295 ntBASIC5.23□□□□□ -1.57
LIG1P18858 CDH12P3-201ENST00000517935 295 ntBASIC5.23□□□□□ -1.57
LIG1P18858 CDH12P1-201ENST00000518435 295 ntBASIC5.23□□□□□ -1.57
LIG1P18858 AC100770.1-201ENST00000532310 322 ntBASIC5.23□□□□□ -1.57
LIG1P18858 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC5.23□□□□□ -1.57
LIG1P18858 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.23□□□□□ -1.57
LIG1P18858 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.23□□□□□ -1.57
LIG1P18858 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.23□□□□□ -1.57
LIG1P18858 KPNA2P1-201ENST00000458289 1591 ntBASIC5.23□□□□□ -1.57
LIG1P18858 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG1P18858 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG1P18858 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIG1P18858 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
LIG1P18858 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIG1P18858 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
LIG1P18858 MTND5P30-201ENST00000452896 1731 ntBASIC5.23□□□□□ -1.57
LIG1P18858 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIG1P18858 EXOC5P1-201ENST00000510543 1969 ntBASIC5.22□□□□□ -1.57
LIG1P18858 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5.22□□□□□ -1.57
LIG1P18858 Y_RNA.188-201ENST00000363952 111 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RNA5SP505-201ENST00000364748 108 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RNU6-784P-201ENST00000384330 106 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RNU6-1127P-201ENST00000384580 107 ntBASIC5.22□□□□□ -1.57
LIG1P18858 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LIG1P18858 RNU6-754P-201ENST00000391166 107 ntBASIC5.22□□□□□ -1.57
LIG1P18858 MIR450B-201ENST00000401182 78 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RPS16P5-201ENST00000406501 404 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RNU6-516P-201ENST00000411381 104 ntBASIC5.22□□□□□ -1.57
LIG1P18858 AL160275.2-201ENST00000412010 394 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RPL30P2-201ENST00000414021 291 ntBASIC5.22□□□□□ -1.57
LIG1P18858 BX510359.2-201ENST00000417920 305 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RPL7P28-201ENST00000437739 740 ntBASIC5.22□□□□□ -1.57
LIG1P18858 AC016831.4-201ENST00000438302 307 ntBASIC5.22□□□□□ -1.57
LIG1P18858 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.22□□□□□ -1.57
LIG1P18858 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIG1P18858 AC073264.2-201ENST00000448886 166 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RPS15AP27-201ENST00000449183 343 ntBASIC5.22□□□□□ -1.57
LIG1P18858 PPIAP3-201ENST00000450588 505 ntBASIC5.22□□□□□ -1.57
LIG1P18858 CEACAMP6-201ENST00000452007 574 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RPL37P6-202ENST00000464216 403 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RN7SL41P-201ENST00000476144 297 ntBASIC5.22□□□□□ -1.57
LIG1P18858 AC135721.1-201ENST00000497954 479 ntBASIC5.22□□□□□ -1.57
LIG1P18858 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.22□□□□□ -1.57
LIG1P18858 RNU6-1213P-201ENST00000517075 94 ntBASIC5.22□□□□□ -1.57
LIG1P18858 AC090151.1-201ENST00000520784 730 ntBASIC5.22□□□□□ -1.57
LIG1P18858 AC090281.1-201ENST00000523019 276 ntBASIC5.22□□□□□ -1.57
LIG1P18858 AP006289.1-201ENST00000538089 277 ntBASIC5.22□□□□□ -1.57
LIG1P18858 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.22□□□□□ -1.57
LIG1P18858 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.22□□□□□ -1.57
LIG1P18858 AL121576.1-201ENST00000556055 276 ntBASIC5.22□□□□□ -1.57
LIG1P18858 MTCO3P23-201ENST00000561363 289 ntBASIC5.22□□□□□ -1.57
LIG1P18858 RN7SL652P-201ENST00000577769 300 ntBASIC5.22□□□□□ -1.57
LIG1P18858 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
LIG1P18858 AC010201.1-201ENST00000605051 540 ntBASIC5.22□□□□□ -1.57
LIG1P18858 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC5.22□□□□□ -1.57
LIG1P18858 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.22□□□□□ -1.57
LIG1P18858 AC010378.1-201ENST00000619270 362 ntBASIC5.22□□□□□ -1.57
LIG1P18858 AL445363.3-201ENST00000623080 671 ntBASIC5.22□□□□□ -1.57
LIG1P18858 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.22□□□□□ -1.57
LIG1P18858 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LIG1P18858 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
LIG1P18858 EFTUD1P2-201ENST00000514817 1603 ntBASIC5.22□□□□□ -1.57
LIG1P18858 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIG1P18858 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.22□□□□□ -1.57
LIG1P18858 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIG1P18858 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.57
LIG1P18858 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
LIG1P18858 XIAPP3-201ENST00000312918 795 ntBASIC5.21□□□□□ -1.58
LIG1P18858 RNU6-1284P-201ENST00000363701 100 ntBASIC5.21□□□□□ -1.58
LIG1P18858 Y_RNA.176-201ENST00000363815 109 ntBASIC5.21□□□□□ -1.58
LIG1P18858 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
LIG1P18858 Y_RNA.463-201ENST00000384271 102 ntBASIC5.21□□□□□ -1.58
LIG1P18858 SNORD51-201ENST00000384320 80 ntBASIC5.21□□□□□ -1.58
LIG1P18858 RNU6-847P-201ENST00000411115 108 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms