Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AP001029.3-201ENST00000588063 596 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 AL590099.1-201ENST00000615276 138 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
COL6A3P12111 AC009902.3-201ENST00000606235 2172 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 RNA5SP393-201ENST00000363423 117 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 Y_RNA.280-201ENST00000364765 112 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 IPO7P1-201ENST00000442031 636 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.29□□□□□ -2.2
COL6A3P12111 LDHBP3-201ENST00000514909 822 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 CYCSP23-201ENST00000519781 313 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 AC025755.1-201ENST00000521306 278 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 AC023050.2-201ENST00000544968 387 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.29□□□□□ -2.2
COL6A3P12111 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.29□□□□□ -2.2
COL6A3P12111 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
COL6A3P12111 U4.2-201ENST00000618561 85 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
COL6A3P12111 DEFB108F-201ENST00000344638 222 ntBASIC1.28□□□□□ -2.2
COL6A3P12111 AL158823.1-201ENST00000418441 478 ntBASIC1.28□□□□□ -2.2
COL6A3P12111 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.28□□□□□ -2.2
COL6A3P12111 AC009127.3-201ENST00000570531 403 ntBASIC1.28□□□□□ -2.2
COL6A3P12111 uc_338.20-201ENST00000621563 178 ntBASIC1.28□□□□□ -2.2
COL6A3P12111 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.28□□□□□ -2.2
COL6A3P12111 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
COL6A3P12111 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.28□□□□□ -2.2
COL6A3P12111 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.28□□□□□ -2.21
COL6A3P12111 Z85995.1-201ENST00000415547 335 ntBASIC1.28□□□□□ -2.21
COL6A3P12111 SUMO2P4-201ENST00000504193 276 ntBASIC1.28□□□□□ -2.21
COL6A3P12111 AC118942.1-201ENST00000529674 1035 ntBASIC1.28□□□□□ -2.21
COL6A3P12111 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.21
COL6A3P12111 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.28□□□□□ -2.21
COL6A3P12111 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
COL6A3P12111 AP001486.2-201ENST00000561652 5113 ntBASIC1.27□□□□□ -2.21
COL6A3P12111 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
COL6A3P12111 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC1.27□□□□□ -2.21
COL6A3P12111 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.27□□□□□ -2.21
COL6A3P12111 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
COL6A3P12111 CR848007.2-201ENST00000424918 787 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.26□□□□□ -2.21
COL6A3P12111 AL132857.1-201ENST00000555180 708 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 Y_RNA.757-201ENST00000578934 114 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 AC073413.2-201ENST00000604332 360 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 AL121917.1-203ENST00000605534 577 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.26□□□□□ -2.21
COL6A3P12111 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
COL6A3P12111 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.26□□□□□ -2.21
COL6A3P12111 RNU6ATAC4P-201ENST00000387446 126 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 RPL7P34-201ENST00000433316 712 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.26□□□□□ -2.21
COL6A3P12111 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
COL6A3P12111 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.26□□□□□ -2.21
COL6A3P12111 Y_RNA.18-201ENST00000362461 102 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 AC233728.2-201ENST00000425348 757 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 RPS15AP7-201ENST00000439294 405 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 RPS26P21-201ENST00000475397 348 ntBASIC1.26□□□□□ -2.21
COL6A3P12111 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.26□□□□□ -2.21
COL6A3P12111 AC008669.1-201ENST00000565823 2178 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 AC100821.1-201ENST00000523153 2479 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.25□□□□□ -2.21
COL6A3P12111 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.25□□□□□ -2.21
COL6A3P12111 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.25□□□□□ -2.21
COL6A3P12111 APOOP3-201ENST00000536787 586 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 AC104229.1-201ENST00000561364 255 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC1.25□□□□□ -2.21
COL6A3P12111 AC016590.3-201ENST00000611171 753 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
COL6A3P12111 AC000111.3-201ENST00000433478 193 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC1.25□□□□□ -2.21
COL6A3P12111 AC012181.1-201ENST00000479895 423 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 AC006499.2-201ENST00000513470 337 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 Y_RNA.675-201ENST00000516389 149 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 AC006270.2-201ENST00000578523 652 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC1.25□□□□□ -2.21
COL6A3P12111 AL589743.1-201ENST00000551932 2712 ntBASIC1.25□□□□□ -2.21
COL6A3P12111 ARL5AP2-201ENST00000444698 533 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 MTND4LP3-201ENST00000468320 276 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 FAM157A-202ENST00000615155 405 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC1.24□□□□□ -2.21
COL6A3P12111 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.24□□□□□ -2.21
COL6A3P12111 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.24□□□□□ -2.21
COL6A3P12111 RNA5SP489-201ENST00000410986 109 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.24□□□□□ -2.21
COL6A3P12111 AC013470.3-201ENST00000420252 1194 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
COL6A3P12111 AC023424.2-201ENST00000493479 777 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 AC107918.3-201ENST00000533272 382 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 MIR3935-201ENST00000583472 104 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
COL6A3P12111 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
COL6A3P12111 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
COL6A3P12111 SNRPEP10-201ENST00000420249 274 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.24□□□□□ -2.21
COL6A3P12111 AC087343.1-201ENST00000477341 475 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.24□□□□□ -2.21
COL6A3P12111 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.24□□□□□ -2.21
COL6A3P12111 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC1.24□□□□□ -2.21
COL6A3P12111 CENPCP1-201ENST00000533085 2578 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 AC011477.1-204ENST00000623416 1325 ntBASIC1.24□□□□□ -2.21
COL6A3P12111 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
COL6A3P12111 AC090740.1-201ENST00000623193 2262 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms