Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNU6-193P-201ENST00000410977 107 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A1P12109 AC068533.1-201ENST00000418542 415 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.65□□□□□ -1.67
COL6A1P12109 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A1P12109 MTCO2P27-201ENST00000420740 428 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AL451054.2-201ENST00000420896 202 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A1P12109 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.65□□□□□ -1.67
COL6A1P12109 OR4K11P-201ENST00000431829 904 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 TIMM9P1-201ENST00000436122 256 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A1P12109 AC127537.2-201ENST00000439258 465 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A1P12109 snoU13.3-201ENST00000459441 104 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 SNORD27.1-201ENST00000516319 72 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 RNU6-1073P-201ENST00000517182 106 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A1P12109 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A1P12109 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
COL6A1P12109 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A1P12109 OR4K8P-201ENST00000578842 1048 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A1P12109 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A1P12109 MIR4298-201ENST00000584380 73 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.65□□□□□ -1.67
COL6A1P12109 GLUD1P4-201ENST00000590914 418 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.65□□□□□ -1.67
COL6A1P12109 AC006329.2-201ENST00000611491 394 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AL391261.4-201ENST00000616012 481 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
COL6A1P12109 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.65□□□□□ -1.67
COL6A1P12109 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.65□□□□□ -1.67
COL6A1P12109 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.65□□□□□ -1.67
COL6A1P12109 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.65□□□□□ -1.67
COL6A1P12109 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.65□□□□□ -1.67
COL6A1P12109 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A1P12109 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A1P12109 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.65□□□□□ -1.67
COL6A1P12109 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A1P12109 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.65□□□□□ -1.67
COL6A1P12109 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.64□□□□□ -1.67
COL6A1P12109 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.64□□□□□ -1.67
COL6A1P12109 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A1P12109 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL6A1P12109 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.64□□□□□ -1.67
COL6A1P12109 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.64□□□□□ -1.67
COL6A1P12109 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A1P12109 ZNF285B-201ENST00000561698 1767 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A1P12109 OR1S2-201ENST00000302592 978 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 Y_RNA.259-201ENST00000364619 101 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 Y_RNA.367-201ENST00000365544 101 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 SNORA4.3-201ENST00000365564 137 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A1P12109 AL121834.1-202ENST00000404494 277 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 RNU2-71P-201ENST00000411395 189 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.64□□□□□ -1.67
COL6A1P12109 PSMA6P3-201ENST00000428242 164 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.64□□□□□ -1.67
COL6A1P12109 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.64□□□□□ -1.67
COL6A1P12109 CYCSP43-201ENST00000438233 310 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 NANOGP10-201ENST00000453325 895 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AC108059.3-201ENST00000456388 214 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AP001992.1-205ENST00000462248 379 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AL049714.1-201ENST00000466686 347 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AF213884.1-201ENST00000488102 463 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AC110792.1-201ENST00000491826 472 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.64□□□□□ -1.67
COL6A1P12109 KLHL2P1-201ENST00000508691 521 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.64□□□□□ -1.67
COL6A1P12109 AC093853.1-201ENST00000515689 483 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 RNU1-95P-201ENST00000516357 160 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 RNU1-128P-201ENST00000516704 160 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 SNORA70.24-201ENST00000517233 118 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AC109635.4-202ENST00000531666 412 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.64□□□□□ -1.67
COL6A1P12109 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.64□□□□□ -1.67
COL6A1P12109 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.64□□□□□ -1.67
COL6A1P12109 UBE2L4-201ENST00000587688 464 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.64□□□□□ -1.67
COL6A1P12109 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.64□□□□□ -1.67
COL6A1P12109 AC010201.1-201ENST00000605051 540 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AC021646.1-201ENST00000605469 484 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 RNU6-89P-201ENST00000606519 100 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 AL355802.3-201ENST00000607571 545 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.64□□□□□ -1.67
COL6A1P12109 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A1P12109 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A1P12109 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A1P12109 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A1P12109 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL6A1P12109 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.64□□□□□ -1.67
COL6A1P12109 AC004925.1-201ENST00000624256 2706 ntBASIC4.64□□□□□ -1.67
COL6A1P12109 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A1P12109 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A1P12109 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A1P12109 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A1P12109 MTCO1P9-201ENST00000505577 1534 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms