Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 RNA5SP428-201ENST00000365129 132 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 RNU6-886P-201ENST00000384319 105 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 SNORA77-201ENST00000408716 125 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 RNU6-712P-201ENST00000410558 100 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AL096701.2-201ENST00000416920 238 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 RPL21P38-201ENST00000418090 167 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 RPS29P9-201ENST00000440360 171 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 RPL26P6-201ENST00000440913 438 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AC073587.1-201ENST00000447093 876 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 IGHV5-78-201ENST00000450948 295 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 RPS11P1-201ENST00000451072 473 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AL139109.1-201ENST00000455491 297 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AC087588.1-201ENST00000462203 316 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 CREM-226ENST00000469949 721 ntTSL 3 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AC008958.1-201ENST00000511047 682 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AC067942.3-201ENST00000512025 362 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 RNU6-143P-201ENST00000516942 93 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 IGKV2-23-201ENST00000518729 323 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AC004852.3-201ENST00000614131 326 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 MTND5P9-201ENST00000503854 1755 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 AC004817.4-201ENST00000602396 3625 ntBASIC5.31□□□□□ -1.56
USP3Q9Y6I4 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
USP3Q9Y6I4 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AC100778.3-201ENST00000580060 1750 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 RNA5SP123-201ENST00000363244 119 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 U3.13-201ENST00000364804 214 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 RNU6-395P-201ENST00000365662 106 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 RNU6-1179P-201ENST00000384667 107 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 SNORA66-201ENST00000384792 133 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 RN7SKP125-201ENST00000410481 302 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 RNU6-121P-201ENST00000410525 99 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 SSXP9-201ENST00000417503 292 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AF186996.5-201ENST00000418098 904 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AL513124.1-201ENST00000450410 614 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AC090602.1-201ENST00000469695 252 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AC231760.1-201ENST00000498002 260 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 HMGN1P11-201ENST00000508668 303 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AMZ2P1-203ENST00000565833 850 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 MIR1273C-201ENST00000578669 77 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 MIR4443-201ENST00000585052 53 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 MAPK10-328ENST00000641553 4009 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP3Q9Y6I4 INTS6P1-201ENST00000504674 2530 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 SDAD1P2-201ENST00000441308 2028 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 AC073136.1-201ENST00000449426 2884 ntBASIC5.3□□□□□ -1.56
USP3Q9Y6I4 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC010266.2-201ENST00000564741 3255 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RPL9P7-201ENST00000330965 580 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RN7SKP95-201ENST00000362860 303 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RNU6-1249P-201ENST00000363237 111 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 Y_RNA.150-201ENST00000363562 102 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RNU6-882P-201ENST00000391025 103 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AL645733.1-201ENST00000402250 217 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 MRPL35P1-201ENST00000404272 572 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms