Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PCDHB3Q9Y5E6 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PCDHB3Q9Y5E6 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PCDHB3Q9Y5E6 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PCDHB3Q9Y5E6 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PCDHB3Q9Y5E6 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.74□□□□□ -1.49
PCDHB3Q9Y5E6 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 MIR412-201ENST00000362142 91 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RNU1-150P-201ENST00000362491 162 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RNA5SP453-201ENST00000362503 119 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-626P-201ENST00000363354 107 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RNA5SP242-201ENST00000364171 118 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-1175P-201ENST00000365200 107 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-1056P-201ENST00000383996 107 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-211P-201ENST00000384047 107 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 MIR143-201ENST00000385300 106 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 AC126120.1-201ENST00000431082 470 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 AC009296.1-201ENST00000443146 155 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RN7SL799P-201ENST00000475891 298 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RNA5SP471-201ENST00000516971 106 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 SNORA31.22-201ENST00000517204 135 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 MIR4776-2-201ENST00000580204 80 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 AL670379.2-201ENST00000604983 252 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 AL138820.1-201ENST00000617901 5305 ntBASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.73□□□□□ -1.49
PCDHB3Q9Y5E6 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AL079305.1-201ENST00000623159 3008 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 LINC01109-201ENST00000603837 3081 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNA5SP375-201ENST00000362975 119 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-512P-201ENST00000364438 103 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 SNORD14B-201ENST00000364533 90 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 MIR539-201ENST00000365690 78 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-20P-201ENST00000384106 107 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNU1-74P-201ENST00000384108 171 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-239P-201ENST00000390990 99 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNA5SP213-201ENST00000391031 106 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AC016739.1-201ENST00000405359 345 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-1025P-201ENST00000410629 104 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RN7SKP293-201ENST00000411389 296 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 MYL6P5-201ENST00000412707 459 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RPL7AP73-201ENST00000413490 353 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RPS5P7-201ENST00000456664 608 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RN7SL269P-201ENST00000467795 305 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 SNORA40.9-201ENST00000515895 93 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-927P-201ENST00000516199 100 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 SNORA25.12-201ENST00000516202 82 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNU6-567P-201ENST00000516746 107 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RN7SL787P-201ENST00000613000 284 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 RNA5SP439-201ENST00000617595 124 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AC006001.4-201ENST00000622243 395 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 SCARNA4-201ENST00000629045 128 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 THAP12P9-201ENST00000503971 2360 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AC004656.1-201ENST00000568479 4951 ntBASIC5.72□□□□□ -1.49
PCDHB3Q9Y5E6 AL451142.2-201ENST00000429076 2090 ntBASIC5.71□□□□□ -1.49
PCDHB3Q9Y5E6 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
PCDHB3Q9Y5E6 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
PCDHB3Q9Y5E6 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.49
PCDHB3Q9Y5E6 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.71□□□□□ -1.49
PCDHB3Q9Y5E6 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms