Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 MIR3200-201ENST00000580767 85 ntBASIC3.81□□□□□ -1.8
EBF3Q9H4W6 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.81□□□□□ -1.8
EBF3Q9H4W6 AC010928.3-201ENST00000587712 541 ntBASIC3.81□□□□□ -1.8
EBF3Q9H4W6 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.81□□□□□ -1.8
EBF3Q9H4W6 BRDTP1-201ENST00000605735 677 ntBASIC3.81□□□□□ -1.8
EBF3Q9H4W6 AL132765.2-201ENST00000610812 351 ntBASIC3.81□□□□□ -1.8
EBF3Q9H4W6 AC006504.8-201ENST00000621046 635 ntBASIC3.81□□□□□ -1.8
EBF3Q9H4W6 AC090337.1-201ENST00000579651 2074 ntBASIC3.81□□□□□ -1.8
EBF3Q9H4W6 AC073346.2-201ENST00000624724 2058 ntBASIC3.81□□□□□ -1.8
EBF3Q9H4W6 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
EBF3Q9H4W6 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.81□□□□□ -1.8
EBF3Q9H4W6 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
EBF3Q9H4W6 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC130650.2-201ENST00000618736 2403 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 SNORD9-201ENST00000362566 104 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 SNORD81.2-201ENST00000365153 76 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 RNU6-359P-201ENST00000365466 108 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 Y_RNA.419-201ENST00000384041 102 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 RNU6-878P-201ENST00000384578 110 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 RNA5SP424-201ENST00000390988 115 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 SNORD115.1-201ENST00000391109 76 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC016769.3-201ENST00000396562 315 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AL024474.1-201ENST00000404655 591 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 RNU2-21P-201ENST00000410368 188 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 SPA17P1-201ENST00000416656 452 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 MTCYBP6-201ENST00000441810 138 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 SNORD105B-201ENST00000458770 79 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 snoU13.24-201ENST00000458998 104 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 snoU13.7-201ENST00000459220 104 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC004801.2-202ENST00000463559 283 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC007182.2-201ENST00000489251 402 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC006390.1-201ENST00000508068 283 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AP003072.1-201ENST00000531740 145 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC007458.1-201ENST00000542812 373 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC090877.1-201ENST00000561418 344 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AL137849.1-201ENST00000604767 169 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC002550.2-201ENST00000621246 394 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 AC090574.1-201ENST00000623186 233 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.8□□□□□ -1.8
EBF3Q9H4W6 CCT4P2-201ENST00000233836 1548 ntBASIC3.8□□□□□ -1.8
EBF3Q9H4W6 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 Y_RNA.58-201ENST00000362807 102 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RNU6-451P-201ENST00000362921 107 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 SNORA63-201ENST00000363450 132 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 Y_RNA.154-201ENST00000363624 102 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RNU6-1243P-201ENST00000364028 107 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RNU6-289P-201ENST00000364093 107 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RNY3P1-201ENST00000365085 102 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RNY3-201ENST00000365484 102 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 Y_RNA.460-201ENST00000384255 102 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RNU6-1226P-201ENST00000384317 107 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 Y_RNA.490-201ENST00000384413 102 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 HSPE1P8-201ENST00000406997 288 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 MTND3P17-201ENST00000416968 344 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 ARPC3P1-201ENST00000437218 533 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AC105402.2-201ENST00000438503 358 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RPL17P49-201ENST00000443728 411 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AC104073.1-201ENST00000451988 151 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RPS20P20-201ENST00000460498 340 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 NIPA2P2-201ENST00000496376 1083 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AC112204.1-201ENST00000502591 103 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AC026427.2-201ENST00000506228 536 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 Y_RNA.672-201ENST00000516289 104 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 SNORA74D-201ENST00000516404 141 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RN7SKP82-201ENST00000516786 223 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 RNU6-445P-201ENST00000516949 107 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AC008011.1-201ENST00000545989 227 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AL845331.3-202ENST00000562856 261 ntBASIC3.79□□□□□ -1.8
EBF3Q9H4W6 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms