Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRAIPQ9BWF2 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRAIPQ9BWF2 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.35□□□□□ -1.55
TRAIPQ9BWF2 AC005183.1-201ENST00000603687 1979 ntBASIC5.35□□□□□ -1.55
TRAIPQ9BWF2 AL672167.1-204ENST00000641875 3017 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 LINC01355-201ENST00000566551 5444 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 RNU6-562P-201ENST00000362731 107 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 Y_RNA.67-201ENST00000362870 100 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 SNORD116-11-201ENST00000383882 92 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 Y_RNA.431-201ENST00000384086 102 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 Y_RNA.509-201ENST00000384506 99 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 SNORA1.3-201ENST00000384676 136 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 MIR34A-201ENST00000385130 110 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 SNRPEP4-201ENST00000435815 279 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 AC005154.2-201ENST00000438110 379 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 BTF3P6-201ENST00000448054 499 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 AC117503.1-201ENST00000472241 394 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 AC006463.2-201ENST00000473326 348 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 RPL7P43-201ENST00000478876 753 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 RNA5SP454-201ENST00000517231 127 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 AC087369.1-201ENST00000520775 996 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 ATP5A1P2-202ENST00000616464 443 ntBASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.34□□□□□ -1.55
TRAIPQ9BWF2 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.56
TRAIPQ9BWF2 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
TRAIPQ9BWF2 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
TRAIPQ9BWF2 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.34□□□□□ -1.56
TRAIPQ9BWF2 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 Y_RNA.212-201ENST00000364177 102 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 Y_RNA.324-201ENST00000365165 102 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 RNU6-1106P-201ENST00000390845 107 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 MIR548F5-201ENST00000408421 86 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 RPL37P10-201ENST00000412884 288 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 UBE2D3P2-201ENST00000424409 445 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AL359672.1-201ENST00000442302 409 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC000111.2-201ENST00000448200 210 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC010326.1-201ENST00000462726 602 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC008897.1-201ENST00000494006 347 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC026801.1-201ENST00000497178 464 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC020593.1-201ENST00000507399 299 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 RNU6-1088P-201ENST00000516850 104 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 SNORA31.19-201ENST00000517079 126 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AP001880.2-201ENST00000538233 448 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC025423.5-201ENST00000550230 219 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC026371.1-201ENST00000551867 419 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC005344.1-201ENST00000613391 459 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC002076.2-201ENST00000617362 122 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC015914.2-201ENST00000618167 288 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 AC019278.1-201ENST00000623516 479 ntBASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC5.33□□□□□ -1.56
TRAIPQ9BWF2 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 RNU4-79P-201ENST00000362764 141 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 RPS4XP3-201ENST00000398541 413 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 MIR298-201ENST00000401212 88 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 HMGN2P30-201ENST00000423237 256 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AL627311.1-201ENST00000431514 115 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AC009220.1-201ENST00000451614 275 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AL691482.1-201ENST00000453255 87 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 AL583843.1-201ENST00000456070 346 ntBASIC5.32□□□□□ -1.56
TRAIPQ9BWF2 RNA5SP103-201ENST00000459503 118 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms