Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC135721.1-201ENST00000497954 479 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 NRON-201ENST00000517270 370 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 HPRT1P3-201ENST00000539521 576 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC106782.4-201ENST00000568264 210 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AL596327.1-201ENST00000603629 213 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC068880.5-201ENST00000624331 290 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC099654.7-201ENST00000635788 2127 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 RNU6-853P-201ENST00000364306 107 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 HSFY7P-201ENST00000432672 318 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 HSFY8P-201ENST00000437934 318 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AC107083.1-201ENST00000439643 279 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AC093156.1-201ENST00000440382 670 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 MTND3P1-201ENST00000441336 220 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 PIGFP3-201ENST00000441918 722 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 HSFY5P-201ENST00000453726 309 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AP1S2P1-201ENST00000457344 379 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 RNA5SP367-201ENST00000516557 118 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 EIF4BP1-201ENST00000554881 351 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AC091057.2-201ENST00000602594 792 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 RPP40P2-201ENST00000603596 712 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AL357094.1-201ENST00000603845 844 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AC004696.1-201ENST00000614345 607 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AC010338.1-201ENST00000621823 717 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 AL161431.1-201ENST00000618966 4205 ntBASIC3.16□□□□□ -1.9
CCDC43Q96MW1 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC43Q96MW1 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
CCDC43Q96MW1 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC43Q96MW1 RPL9P7-201ENST00000330965 580 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 RNU1-35P-201ENST00000362782 153 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 RNU6-906P-201ENST00000384700 70 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 U3.20-201ENST00000390909 217 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 RNA5SP354-201ENST00000391247 136 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AL109755.1-201ENST00000401791 649 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AL451074.5-201ENST00000415894 435 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC104332.2-201ENST00000429959 156 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AL117351.1-201ENST00000438864 766 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC004854.1-201ENST00000440356 349 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AL049734.2-201ENST00000441066 616 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AL135938.1-201ENST00000443141 297 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC104090.1-201ENST00000506341 1171 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC009901.1-201ENST00000506703 541 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC087373.1-201ENST00000524920 491 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 TRAV28-201ENST00000557548 323 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 MTCO2P2-201ENST00000591258 225 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 TPMTP1-201ENST00000592307 737 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 VN1R92P-201ENST00000598511 928 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC010620.2-201ENST00000600135 313 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC097478.2-201ENST00000610572 514 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AL020991.1-201ENST00000612314 373 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AC004852.3-201ENST00000614131 326 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 TUG1_2.1-201ENST00000614234 87 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 AL136981.2-201ENST00000617319 734 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC43Q96MW1 ASNSP3-201ENST00000451989 1306 ntBASIC3.15□□□□□ -1.91
CCDC43Q96MW1 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 RNU6-741P-201ENST00000383889 107 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 SNORA18.3-201ENST00000384122 132 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 RNU6-432P-201ENST00000384196 109 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 RPL17P50-201ENST00000396131 546 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AL590084.2-201ENST00000401481 382 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 TXNP7-201ENST00000406296 293 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 UBE2FP1-201ENST00000416536 447 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 AC083875.1-201ENST00000419509 405 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 SETP8-201ENST00000435341 628 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 RPS29P6-201ENST00000438196 145 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 Z82210.1-201ENST00000440037 231 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 Z96811.1-201ENST00000445880 108 ntBASIC3.14□□□□□ -1.91
CCDC43Q96MW1 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CCDC43Q96MW1 RNU7-23P-201ENST00000459465 62 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms