Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC140Q96MF4 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
CCDC140Q96MF4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.09□□□□□ -1.76
CCDC140Q96MF4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
CCDC140Q96MF4 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.09□□□□□ -1.76
CCDC140Q96MF4 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 SNORA31-201ENST00000362607 130 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 RNU6-428P-201ENST00000362942 107 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 RNU6-238P-201ENST00000363313 106 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 RN7SKP160-201ENST00000363804 340 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 RNY3P11-201ENST00000364153 102 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 U8.8-201ENST00000365399 135 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 SNORA67-201ENST00000384423 137 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.533-201ENST00000384596 114 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 RPL17P36-201ENST00000420302 549 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 DPH3P2-201ENST00000422618 250 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 NUP35P1-201ENST00000422734 947 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 CFL1P1-202ENST00000432948 411 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 SNRPEP4-201ENST00000435815 279 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AL451050.1-201ENST00000450126 415 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 U8.21-201ENST00000459536 136 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 RN7SL629P-201ENST00000489622 285 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 BX510359.5-201ENST00000515651 304 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 RNU6-377P-201ENST00000515965 102 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.687-201ENST00000516558 91 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 CASP1P1-201ENST00000526345 212 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 GNAI2P1-201ENST00000541815 315 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AL359219.2-201ENST00000555184 348 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 MIR3690-201ENST00000580266 75 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 IMMP1LP3-201ENST00000604197 224 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AC013244.1-201ENST00000604279 193 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AL512624.1-201ENST00000613638 469 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 AC090617.7-201ENST00000623952 126 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.08□□□□□ -1.76
CCDC140Q96MF4 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
CCDC140Q96MF4 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.47-201ENST00000362697 108 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.149-201ENST00000363558 117 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.424-201ENST00000384063 103 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 PPIAP31-201ENST00000405422 495 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 MIR548F4-201ENST00000408515 105 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 U3.42-201ENST00000408746 214 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 RNU6-101P-201ENST00000410323 104 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC092047.1-201ENST00000424997 240 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC098614.2-201ENST00000426040 255 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 MTND3P9-201ENST00000429526 346 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 OR2AQ1P-201ENST00000451972 200 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AURKAPS2-201ENST00000454983 333 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC104164.2-201ENST00000496953 495 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC116655.1-201ENST00000508324 901 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC023141.12-201ENST00000512399 199 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 ATP5LP3-201ENST00000514223 304 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC006427.1-201ENST00000514359 712 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 RNU6-635P-201ENST00000516651 102 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 RNA5SP468-201ENST00000516782 93 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 IGKV2-18-201ENST00000522607 343 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC007991.1-201ENST00000522680 631 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC113195.1-201ENST00000579952 141 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 MIR3176-201ENST00000582210 90 ntBASIC4.07□□□□□ -1.76
CCDC140Q96MF4 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC140Q96MF4 AC069307.1-201ENST00000602820 447 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms