Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNU6-1078P-201ENST00000364522 103 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 AL117351.1-201ENST00000438864 766 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 RPS20P20-201ENST00000460498 340 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 AC097493.1-201ENST00000463958 372 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 HMGB1P36-201ENST00000487709 576 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 PSMA2P1-201ENST00000526365 646 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 GLYCAM1-201ENST00000546596 285 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VPS39Q96JC1 AL355836.1-201ENST00000555951 870 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 BBIP1P1-201ENST00000602999 279 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 AC096577.2-201ENST00000611455 153 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 AC009039.2-201ENST00000624524 529 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
VPS39Q96JC1 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS39Q96JC1 AL355596.1-201ENST00000565399 3996 ntBASIC2.91□□□□□ -1.94
VPS39Q96JC1 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.9□□□□□ -1.94
VPS39Q96JC1 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.9□□□□□ -1.94
VPS39Q96JC1 RPL9P7-201ENST00000330965 580 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 RNU6-637P-201ENST00000384050 107 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 MIR512-1-201ENST00000384913 84 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AL139281.1-201ENST00000422120 335 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC098614.2-201ENST00000426040 255 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 RPS15AP7-201ENST00000439294 405 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 RPL37P4-201ENST00000448908 268 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 RPL31P50-201ENST00000471002 296 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 RPL7P18-201ENST00000478965 734 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 RPS15AP34-201ENST00000487776 387 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC138853.1-201ENST00000503549 823 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 RN7SKP265-201ENST00000516448 223 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 RNA5SP291-201ENST00000517222 105 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 RNU6-840P-201ENST00000517275 65 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 SUB1P1-201ENST00000524415 382 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 OR1M4P-201ENST00000589199 287 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AL355877.2-201ENST00000603670 358 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC090115.4-201ENST00000609970 188 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC245297.2-201ENST00000610119 565 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC068787.1-201ENST00000623908 691 ntBASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS39Q96JC1 MAPK10-266ENST00000641066 6555 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 AL161781.1-201ENST00000354277 403 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 RNU6-289P-201ENST00000364093 107 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 RNU6-157P-201ENST00000383957 107 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 RNU6-217P-201ENST00000384164 104 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 RNU6-851P-201ENST00000384565 107 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 MIR181A2-201ENST00000384863 110 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 PIGPP2-201ENST00000411569 458 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 USP9YP33-201ENST00000412220 421 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC022018.1-201ENST00000430685 241 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 GTF2IP20-201ENST00000431663 360 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 USP9YP35-201ENST00000435696 412 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 MTND1P9-201ENST00000453775 944 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 247.6 ms