Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.14□□□□□ -1.91
VMP1Q96GC9 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VMP1Q96GC9 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VMP1Q96GC9 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VMP1Q96GC9 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 RNA5SP197-201ENST00000363357 119 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 U3.6-201ENST00000363622 211 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 SNORA51.4-201ENST00000364993 124 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VMP1Q96GC9 MIR19A-201ENST00000384878 82 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AL122016.1-201ENST00000403365 367 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 RPL17P12-201ENST00000413391 526 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 BTF3L4P3-201ENST00000418879 476 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 AL445669.1-201ENST00000426743 755 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AL035407.1-201ENST00000429211 571 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC244505.4-201ENST00000434905 287 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AL513043.1-201ENST00000439124 535 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 AL591503.2-201ENST00000442314 1005 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 SSXP5-201ENST00000443473 287 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC020550.1-201ENST00000447385 163 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 RNU1-143P-201ENST00000516296 146 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC068587.4-201ENST00000533893 186 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 DUXAP1-201ENST00000556632 463 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 BNIP3P23-201ENST00000599655 511 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 AC007179.3-201ENST00000604976 235 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VMP1Q96GC9 U1.23-201ENST00000610293 146 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 RNU1-68P-201ENST00000615382 146 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 U1.39-201ENST00000621562 146 ntBASIC3.13□□□□□ -1.91
VMP1Q96GC9 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
VMP1Q96GC9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
VMP1Q96GC9 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
VMP1Q96GC9 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VMP1Q96GC9 RPL21P132-201ENST00000331267 462 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 Y_RNA.245-201ENST00000364493 95 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 SNORA68.1-201ENST00000364537 132 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 RNU6-83P-201ENST00000384568 112 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AL356057.2-201ENST00000403318 432 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AC007899.1-201ENST00000412776 775 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AC244035.1-201ENST00000430042 390 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AC092427.1-202ENST00000430569 476 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 RN7SL499P-201ENST00000481141 276 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 RPL21P13-201ENST00000488305 481 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 RPS29P20-201ENST00000489592 171 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AC104685.1-201ENST00000502445 371 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 AC068790.3-201ENST00000602988 553 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AL136370.1-201ENST00000608166 691 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AC103710.1-201ENST00000610003 901 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AL356321.1-201ENST00000621360 228 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 AP001002.2-201ENST00000625137 386 ntBASIC3.12□□□□□ -1.91
VMP1Q96GC9 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.12□□□□□ -1.91
VMP1Q96GC9 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 CR383658.2-201ENST00000547576 1525 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 FAM133CP-201ENST00000332869 704 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 MIR208A-201ENST00000362287 71 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 SNORA70.4-201ENST00000365509 134 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 RNA5SP88-201ENST00000365560 109 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 SET-203ENST00000372688 801 ntTSL 2 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 RNU6-278P-201ENST00000390945 109 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 RNU6-584P-201ENST00000410350 95 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 SSR1P2-201ENST00000415208 787 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 HMGB1P49-201ENST00000418882 569 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC005326.1-201ENST00000429197 123 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 RPS15AP5-201ENST00000436276 388 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 SNRPEP9-201ENST00000436794 238 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 RPS15AP7-201ENST00000439294 405 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC104978.1-201ENST00000449387 391 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 snoU13.22-201ENST00000459428 104 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC105252.1-201ENST00000503089 286 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AIG1P1-201ENST00000503376 148 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC091951.3-201ENST00000504093 246 ntBASIC3.11□□□□□ -1.91
VMP1Q96GC9 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
VMP1Q96GC9 AC110794.1-201ENST00000505816 425 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms