Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL139095.1-201ENST00000404326 391 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 RPL27AP8-201ENST00000424277 446 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 RPS3AP12-201ENST00000443616 753 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 MTCYBP3-201ENST00000445588 1137 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 RNA5SP310-201ENST00000459084 116 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AL049714.1-201ENST00000466686 347 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 RPL27AP5-201ENST00000469428 449 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC034222.1-201ENST00000494052 532 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC026427.2-201ENST00000506228 536 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 LTV1P1-201ENST00000510683 1237 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 RNA5SP341-201ENST00000516261 117 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 RNU6-798P-201ENST00000516912 103 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 Y_RNA.717-201ENST00000517106 92 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 SNORA31.22-201ENST00000517204 135 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC068587.4-201ENST00000533893 186 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 ELOCP32-201ENST00000548625 324 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC002400.1-201ENST00000569310 726 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 MIR4999-201ENST00000585029 91 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC103710.4-201ENST00000609301 899 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AP000254.1-201ENST00000609934 520 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AL162274.2-201ENST00000614406 332 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC002076.2-201ENST00000617362 122 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC131159.1-201ENST00000621854 213 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC079597.1-201ENST00000624306 508 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AC017037.3-201ENST00000625016 472 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.61□□□□□ -1.99
SKA3Q8IX90 MTND4P16-201ENST00000466108 1367 ntBASIC2.61□□□□□ -1.99
SKA3Q8IX90 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SKA3Q8IX90 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 DEFB108F-201ENST00000344638 222 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 RNU5A-1-201ENST00000362698 116 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 RNU6-660P-201ENST00000364566 109 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 CD24P4-201ENST00000382840 243 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 RNU6-637P-201ENST00000384050 107 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 MIR181B1-201ENST00000385240 110 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC119751.3-201ENST00000399720 670 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AL138885.1-201ENST00000405921 675 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 RAP1BP1-201ENST00000412709 553 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC005005.2-201ENST00000420779 380 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 PPP1R11P2-201ENST00000423543 382 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 NDUFB4P6-201ENST00000436819 366 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 RPL23AP58-201ENST00000440453 469 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AL606662.1-201ENST00000445763 553 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AL359385.1-201ENST00000456509 365 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SKA3Q8IX90 AL359273.1-201ENST00000510918 627 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 DEFB108D-201ENST00000527787 222 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 HSPE1P20-201ENST00000538133 289 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC090888.2-201ENST00000559765 1144 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 MIR3921-201ENST00000577308 85 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC021171.1-201ENST00000603137 706 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AL353778.1-201ENST00000603149 408 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 RPL23AP88-201ENST00000605759 454 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC097468.3-201ENST00000607956 456 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC009570.1-201ENST00000609599 745 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC140725.3-201ENST00000616193 880 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 ATP5A1P2-202ENST00000616464 443 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AL031667.3-201ENST00000620124 655 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 PCMTD1P7-201ENST00000634506 357 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 AC099063.3-201ENST00000642066 185 ntBASIC2.6□□□□□ -1.99
SKA3Q8IX90 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
SKA3Q8IX90 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC005832.2-201ENST00000538921 1430 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC006378.2-201ENST00000623178 2476 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SKA3Q8IX90 MIR491-201ENST00000384877 84 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 TAS2R15P-201ENST00000390674 928 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 204.8 ms