Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU1-44P-201ENST00000384453 163 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 MIR548K-201ENST00000408406 116 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 RNA5SP36-201ENST00000410197 133 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 RN7SKP177-201ENST00000410567 355 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 CYCSP19-201ENST00000411715 316 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 AL133384.1-201ENST00000412744 351 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.33□□□□□ -1.72
USP39Q53GS9 AC007389.2-201ENST00000434630 306 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 RPS20P5-201ENST00000434808 360 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.33□□□□□ -1.72
USP39Q53GS9 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.33□□□□□ -1.72
USP39Q53GS9 AC073587.1-201ENST00000447093 876 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 AC005297.2-201ENST00000450430 606 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 HMGB3P22-202ENST00000451823 572 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 AC055855.1-201ENST00000489563 579 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 AC106872.2-201ENST00000494303 480 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.33□□□□□ -1.72
USP39Q53GS9 AC099522.1-202ENST00000514718 367 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 RNU6-864P-201ENST00000516256 108 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 RNA5SP519-201ENST00000516480 119 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 RNU6-264P-201ENST00000517134 104 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 MYL12AP1-201ENST00000518490 515 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.33□□□□□ -1.72
USP39Q53GS9 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.33□□□□□ -1.72
USP39Q53GS9 AP003122.3-201ENST00000526316 255 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 AC103843.2-201ENST00000530523 682 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.33□□□□□ -1.72
USP39Q53GS9 OR5B10P-201ENST00000532869 642 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.33□□□□□ -1.72
USP39Q53GS9 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.33□□□□□ -1.72
USP39Q53GS9 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 AC053481.3-201ENST00000577881 843 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 MIR4444-1-201ENST00000581696 74 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 MIR4444-2-201ENST00000584390 74 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 MIR3942-201ENST00000585264 109 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 AC105224.1-201ENST00000587055 421 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 UBE2L4-201ENST00000587688 464 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 GLUD1P4-201ENST00000590914 418 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 MIR6075-201ENST00000620782 95 ntBASIC4.33□□□□□ -1.72
USP39Q53GS9 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP39Q53GS9 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
USP39Q53GS9 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
USP39Q53GS9 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.32□□□□□ -1.72
USP39Q53GS9 MTND4P1-201ENST00000457501 1466 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
USP39Q53GS9 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USP39Q53GS9 AC067945.1-201ENST00000342609 618 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.32□□□□□ -1.72
USP39Q53GS9 RNA5SP130-201ENST00000364431 114 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 Y_RNA.373-201ENST00000365600 103 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 RNU6-441P-201ENST00000384545 106 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 MIR649-201ENST00000384843 97 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 ENSAP1-201ENST00000392855 326 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USP39Q53GS9 RNU6ATAC-201ENST00000408749 126 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.32□□□□□ -1.72
USP39Q53GS9 RN7SKP235-201ENST00000410662 305 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 AC012065.2-201ENST00000421295 375 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 AL157831.1-201ENST00000426134 473 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.32□□□□□ -1.72
USP39Q53GS9 RPL23AP74-201ENST00000437246 471 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.32□□□□□ -1.72
USP39Q53GS9 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.32□□□□□ -1.72
USP39Q53GS9 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.32□□□□□ -1.72
USP39Q53GS9 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.32□□□□□ -1.72
USP39Q53GS9 AC133473.1-201ENST00000455173 299 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 AP000926.1-201ENST00000479573 241 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.32□□□□□ -1.72
USP39Q53GS9 SMURF2P1-201ENST00000514992 481 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 RNU6-1088P-201ENST00000516850 104 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
USP39Q53GS9 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.32□□□□□ -1.72
USP39Q53GS9 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.32□□□□□ -1.72
USP39Q53GS9 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.32□□□□□ -1.72
USP39Q53GS9 MIR4424-201ENST00000585257 86 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 AL669831.4-202ENST00000590817 238 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 CYP2C61P-201ENST00000604072 290 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 AC007546.1-201ENST00000619452 559 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 AC055839.1-201ENST00000634467 498 ntBASIC4.32□□□□□ -1.72
USP39Q53GS9 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.32□□□□□ -1.72
USP39Q53GS9 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
USP39Q53GS9 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USP39Q53GS9 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.32□□□□□ -1.72
USP39Q53GS9 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USP39Q53GS9 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
USP39Q53GS9 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.32□□□□□ -1.72
USP39Q53GS9 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.32□□□□□ -1.72
USP39Q53GS9 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.31□□□□□ -1.72
USP39Q53GS9 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP39Q53GS9 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP39Q53GS9 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP39Q53GS9 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
USP39Q53GS9 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms