Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 BX295541.1-201ENST00000417774 250 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 UBE2D3P2-201ENST00000424409 445 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AC007283.2-201ENST00000424739 197 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 USP9YP15-201ENST00000442391 422 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AC244505.5-201ENST00000443639 207 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 RANP8-201ENST00000444720 713 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 snoU109.1-201ENST00000459339 135 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 RPL21P11-201ENST00000461458 483 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AC108860.1-201ENST00000484521 383 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 TRBV12-2-201ENST00000489763 344 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 HSPD1P15-201ENST00000505573 1122 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 ARL2BPP4-201ENST00000506854 471 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 MTND3P5-201ENST00000512798 333 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 SNORA18.6-201ENST00000516792 115 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 RNU6-840P-201ENST00000517275 65 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 HMGN1P28-201ENST00000521340 364 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AP000857.1-201ENST00000532151 543 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AC012213.3-201ENST00000577199 777 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 MIR3118-1-201ENST00000581787 76 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 CKS1BP3-201ENST00000600888 237 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 BNIP3P10-201ENST00000605360 577 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AC138749.5-201ENST00000611461 208 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AC116165.2-201ENST00000616705 206 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 AC091953.2-201ENST00000623979 160 ntBASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PDLIM3Q53GG5 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 CUL1P1-201ENST00000509510 2425 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 Y_RNA.194-201ENST00000363985 102 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 RNU4-91P-201ENST00000364778 135 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 RNU6-348P-201ENST00000384386 107 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 MORF4L1P6-201ENST00000418771 268 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL353777.1-201ENST00000425552 326 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 MTATP6P4-201ENST00000427725 675 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC119618.1-201ENST00000434191 222 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 TIMM9P1-201ENST00000436122 256 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC140076.1-201ENST00000449897 361 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC006483.1-201ENST00000487308 313 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL049874.1-201ENST00000489560 388 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 RN7SL323P-201ENST00000494712 295 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 SNORA31.1-201ENST00000515993 133 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 SNORA31.5-201ENST00000516190 133 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 RNU2-46P-201ENST00000517038 113 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC135279.1-201ENST00000543493 504 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL133153.1-201ENST00000557756 303 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 MED28P6-201ENST00000558776 231 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 MIR3146-201ENST00000580367 79 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AF038458.1-201ENST00000588406 262 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL133393.1-201ENST00000603277 287 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC106900.2-201ENST00000604994 317 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC012443.1-201ENST00000605605 231 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 RNU6-87P-201ENST00000607561 108 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC004908.2-201ENST00000609090 574 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC011939.3-201ENST00000613686 466 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AC108479.2-201ENST00000617314 601 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL603758.1-201ENST00000618654 241 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 AL732618.1-201ENST00000623251 301 ntBASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.09□□□□□ -1.91
PDLIM3Q53GG5 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms