Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 MTCO2P2-201ENST00000591258 225 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 RPL23AP88-201ENST00000605759 454 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC068880.5-201ENST00000624331 290 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC079228.1-201ENST00000624774 1049 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC010680.1-201ENST00000590024 3590 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 SNORD56.5-201ENST00000364281 72 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 SNORA18.3-201ENST00000384122 132 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 SPA17P1-201ENST00000416656 452 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AL512844.2-201ENST00000433990 593 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 MRPL50P4-201ENST00000446432 475 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 MTND2P24-201ENST00000453434 806 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 MTND1P9-201ENST00000453775 944 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AC103975.1-201ENST00000482506 483 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AC104090.1-201ENST00000506341 1171 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AL596327.1-201ENST00000603629 213 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AC019159.1-201ENST00000605094 187 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AC103798.2-201ENST00000624292 632 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 MIR4275-201ENST00000636486 87 ntBASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC40Q4G0X9 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC40Q4G0X9 RNU1-109P-201ENST00000383960 147 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 UBA52P6-201ENST00000399822 382 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 RPL7P37-201ENST00000425095 738 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC084290.1-201ENST00000434995 374 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 ARPC3P1-201ENST00000437218 533 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 MTND3P1-201ENST00000441336 220 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 MTCO1P27-201ENST00000448269 226 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 NANOGNBP1-201ENST00000448444 480 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 PAXBP1P1-201ENST00000449315 447 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AP000705.1-201ENST00000454567 350 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AL109741.2-201ENST00000455561 343 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 DUXAP8-207ENST00000456786 622 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC093281.2-201ENST00000510153 597 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 MTCO1P47-201ENST00000523889 1271 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC128657.1-201ENST00000549459 145 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 HMGB1P6-201ENST00000569046 646 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3□□□□□ -1.93
CCDC40Q4G0X9 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC40Q4G0X9 MIR3670-2-201ENST00000582974 65 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 MIR3670-1-201ENST00000584160 65 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 MIR3670-3-201ENST00000584855 65 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 BNIP3P39-201ENST00000601077 554 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 HNRNPDLP4-201ENST00000605144 301 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC008277.2-201ENST00000605196 797 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC112220.3-201ENST00000605502 502 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC009974.1-201ENST00000608881 455 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AL133445.2-201ENST00000611191 527 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 MIR3670-4-201ENST00000612260 65 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC009268.2-201ENST00000621925 457 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 AC079597.1-201ENST00000624306 508 ntBASIC3□□□□□ -1.93
CCDC40Q4G0X9 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC40Q4G0X9 AL049641.1-201ENST00000441055 1948 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 RNU6-1180P-201ENST00000364935 107 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 SNORA23-201ENST00000365128 182 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 RNU1-39P-201ENST00000383897 165 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AL592148.1-201ENST00000413568 445 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 TXNL1P1-201ENST00000429528 554 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC129850.1-201ENST00000436203 508 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 FGF7P5-201ENST00000441829 291 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 RPL23AP20-201ENST00000447965 421 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms