Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AL161713.1-201ENST00000555538 145 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 7SK.7-201ENST00000603504 247 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AC034236.3-201ENST00000605999 461 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AC004943.3-201ENST00000624116 600 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 VTRNA1-1-201ENST00000363120 99 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 RNA5SP189-201ENST00000364920 115 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 MTND4LP13-201ENST00000425022 298 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AL445305.1-201ENST00000432577 575 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 CLIC4P1-201ENST00000453177 535 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 RPS15AP1-201ENST00000457423 391 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AC011468.4-201ENST00000603942 409 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 RNF6P1-201ENST00000444889 1784 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 RPL31P2-201ENST00000413849 377 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AC089999.1-201ENST00000460336 374 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AC093281.2-201ENST00000510153 597 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AC025423.2-201ENST00000537570 439 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 RNA5SP108-201ENST00000605921 117 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 AC096772.1-201ENST00000609146 564 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 Xist_exon1.1-201ENST00000618930 85 ntBASIC1.19□□□□□ -2.22
CHD9Q3L8U1 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.19□□□□□ -2.22
CHD9Q3L8U1 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 MIR216A-201ENST00000385063 110 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 TRAV31-201ENST00000502780 342 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 MTCYBP37-201ENST00000510642 1133 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 MIR4458-201ENST00000578872 75 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 CNOT6LP1-201ENST00000559681 1462 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 RNU1-78P-201ENST00000391248 165 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 EBAG9P1-201ENST00000418955 543 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 AC005534.2-201ENST00000431047 433 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 AC010683.1-201ENST00000473673 378 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 AC009127.3-201ENST00000570531 403 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 SNORA18.2-201ENST00000383865 132 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 UBE2V2P1-201ENST00000434717 398 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 FABP5P3-201ENST00000437960 408 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 AC113155.1-201ENST00000511141 769 ntBASIC1.18□□□□□ -2.22
CHD9Q3L8U1 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD9Q3L8U1 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CHD9Q3L8U1 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CHD9Q3L8U1 Z86062.1-201ENST00000406773 777 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 RPS23P4-201ENST00000487908 423 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AL121839.1-201ENST00000556233 1185 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC1.17□□□□□ -2.22
CHD9Q3L8U1 RBBP8P1-201ENST00000449447 1844 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AC016769.3-201ENST00000396562 315 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 HMGN2P20-201ENST00000437531 273 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 SEM1P1-201ENST00000506694 209 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AC010928.2-201ENST00000588017 287 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AC004241.3-201ENST00000611728 517 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AC008133.2-201ENST00000624540 351 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
CHD9Q3L8U1 AC068700.1-201ENST00000565862 3754 ntBASIC1.17□□□□□ -2.22
CHD9Q3L8U1 MIR532-201ENST00000385025 91 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 RPL31P52-201ENST00000407532 367 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 RNU6-603P-201ENST00000411403 107 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 HMGN2P35-201ENST00000412164 270 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC1.16□□□□□ -2.22
CHD9Q3L8U1 AL445687.1-201ENST00000439946 251 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 NEFMP1-201ENST00000443423 1006 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 OR9N1P-202ENST00000494289 481 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC1.16□□□□□ -2.22
CHD9Q3L8U1 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC1.16□□□□□ -2.22
CHD9Q3L8U1 AC090970.3-201ENST00000612566 866 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 AC022079.2-201ENST00000619739 566 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 HMGB1P5-201ENST00000255320 642 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 Y_RNA.258-201ENST00000364613 105 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 RNU6-203P-201ENST00000384038 104 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 AL591034.1-201ENST00000407447 340 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 AL358176.2-201ENST00000425769 204 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 CBX3P6-201ENST00000430257 527 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 VN1R108P-201ENST00000431580 830 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms