Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SNRPGP15-201ENST00000600149 222 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AL606490.9-201ENST00000603331 271 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC024940.5-201ENST00000622889 474 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC110801.1-201ENST00000623590 212 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-996P-201ENST00000365438 107 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-641P-201ENST00000384006 107 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-76P-201ENST00000384060 104 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 MIR3074-201ENST00000384885 81 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-876P-201ENST00000391295 104 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 TXNP7-201ENST00000406296 293 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AL354719.1-201ENST00000406535 843 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 RN7SKP177-201ENST00000410567 355 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC009237.5-201ENST00000414271 501 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 SDCBPP3-201ENST00000419629 891 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 RAC1P6-201ENST00000423911 575 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AL691449.1-201ENST00000426570 421 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 RPS11P1-201ENST00000451072 473 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC010631.1-201ENST00000474150 156 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC078785.3-201ENST00000476607 425 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 RN7SL432P-201ENST00000484057 298 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC110792.1-201ENST00000491826 472 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC026427.2-201ENST00000506228 536 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC023632.4-201ENST00000517783 191 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC120057.2-201ENST00000571520 271 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AF038458.1-201ENST00000588406 262 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AL022099.1-201ENST00000604551 712 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 MIR4727-201ENST00000622232 55 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 MIR6500-201ENST00000622700 86 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC093648.1-201ENST00000623546 606 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC024614.3-201ENST00000637860 256 ntBASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PTCHD3Q3KNS1 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 LINC02471-203ENST00000641941 4752 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC004972.1-201ENST00000623934 2209 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC009812.4-201ENST00000569134 1805 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 RNA5SP399-201ENST00000364003 117 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 Y_RNA.381-201ENST00000365666 102 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AL138799.3-201ENST00000438968 350 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 MTND4P25-201ENST00000441039 533 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 GAPDHP27-201ENST00000447427 1020 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 HMGN2P21-201ENST00000447764 270 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 CACYBPP2-201ENST00000453625 678 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 MRPS17P3-201ENST00000465453 385 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC006512.1-201ENST00000468816 291 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 RN7SL132P-201ENST00000478131 296 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 NIPA2P2-201ENST00000496376 1083 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC146944.2-203ENST00000502493 354 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 HMGB1P22-201ENST00000505315 124 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC020593.1-201ENST00000507399 299 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC139495.1-202ENST00000513164 354 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 RNA5SP401-201ENST00000515920 127 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 Y_RNA.702-201ENST00000516843 96 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 HIF1AP1-201ENST00000553642 175 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 OR4H12P-201ENST00000556269 907 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC006130.2-201ENST00000586202 326 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 209 ms