Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL589872.1-201ENST00000426602 288 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC005019.1-201ENST00000436455 431 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 Z74696.2-201ENST00000436514 498 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC005094.1-201ENST00000440420 368 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC244505.5-201ENST00000443639 207 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 GAPDHP17-201ENST00000449858 1001 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 KC877373.1-201ENST00000479066 408 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC092451.1-201ENST00000480211 153 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC108860.1-201ENST00000484521 383 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AP001086.1-201ENST00000494882 321 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC105914.1-201ENST00000511798 226 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 RNU2-46P-201ENST00000517038 113 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 ERHP1-201ENST00000523006 310 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 MIR3921-201ENST00000577308 85 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 MIR4528-201ENST00000577763 90 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC087683.1-201ENST00000591187 441 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 DUXAP4-201ENST00000603046 613 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC079089.3-201ENST00000603094 673 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AP001330.4-201ENST00000604350 154 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 RNU1-30P-201ENST00000606575 163 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 ZNF807-201ENST00000328088 1707 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 CEP170P1-201ENST00000502249 4587 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 RIOK3P1-201ENST00000418778 1528 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 SNORA80A-201ENST00000363922 136 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 RNU6-278P-201ENST00000390945 109 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 RPL23AP32-201ENST00000395315 459 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AL139095.1-201ENST00000404326 391 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 RN7SKP285-201ENST00000410137 318 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 RNU2-16P-201ENST00000410712 136 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC019097.1-201ENST00000424783 735 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 CYCSP4-201ENST00000429682 331 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 HMGB1P12-201ENST00000438594 598 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 ELOCP30-201ENST00000447108 299 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 MTND1P3-201ENST00000484956 952 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 NDUFB4P2-201ENST00000509515 391 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC103843.2-201ENST00000530523 682 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 MIR5047-201ENST00000579212 100 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC105224.1-201ENST00000587055 421 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 BDH2P1-201ENST00000602288 736 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC015871.2-201ENST00000603605 948 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC104073.3-201ENST00000610942 955 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AL162274.2-201ENST00000614406 332 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 MIR7112-201ENST00000616126 65 ntBASIC3.51□□□□□ -1.85
COL28A1Q2UY09 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.51□□□□□ -1.85
COL28A1Q2UY09 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 RNA5SP374-201ENST00000362939 125 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 SNORA23-201ENST00000365128 182 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 Y_RNA.359-201ENST00000365498 102 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 OR5H15-201ENST00000383696 930 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 SNORA36C-201ENST00000384289 132 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 RPL27AP8-201ENST00000424277 446 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 151.6 ms