Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 Xist_exon4.1-201ENST00000615964 126 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 AL596245.1-201ENST00000618994 362 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 AC055839.1-201ENST00000634467 498 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A3Q01955 AC244517.1-201ENST00000606030 2086 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.04□□□□□ -1.76
COL4A3Q01955 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.04□□□□□ -1.76
COL4A3Q01955 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 AC004972.1-201ENST00000623934 2209 ntBASIC4.04□□□□□ -1.76
COL4A3Q01955 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A3Q01955 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A3Q01955 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.04□□□□□ -1.76
COL4A3Q01955 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.04□□□□□ -1.76
COL4A3Q01955 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A3Q01955 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC4.04□□□□□ -1.76
COL4A3Q01955 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A3Q01955 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A3Q01955 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A3Q01955 RNA5SP51-201ENST00000364750 119 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 Y_RNA.395-201ENST00000383945 109 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 Y_RNA.530-201ENST00000384587 101 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC069218.2-201ENST00000411665 344 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A3Q01955 RBMY1KP-201ENST00000423480 476 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC009965.2-201ENST00000425328 970 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A3Q01955 MTATP6P16-201ENST00000434543 526 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A3Q01955 SRP72-202ENST00000504757 745 ntTSL 2 BASIC4.03□□□□□ -1.76
COL4A3Q01955 RNU2-10P-201ENST00000516375 211 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 RNU6-1046P-201ENST00000516538 107 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC007458.1-201ENST00000542812 373 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.03□□□□□ -1.76
COL4A3Q01955 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A3Q01955 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.03□□□□□ -1.76
COL4A3Q01955 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.03□□□□□ -1.76
COL4A3Q01955 XIAPP1-201ENST00000603162 600 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AL121992.2-201ENST00000606262 256 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.03□□□□□ -1.76
COL4A3Q01955 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.03□□□□□ -1.76
COL4A3Q01955 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A3Q01955 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
COL4A3Q01955 AC009313.2-201ENST00000417893 1941 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A3Q01955 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A3Q01955 MTND4P14-201ENST00000435799 1354 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.03□□□□□ -1.76
COL4A3Q01955 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A3Q01955 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A3Q01955 RN7SKP44-201ENST00000363602 316 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 U3.11-201ENST00000364476 212 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
COL4A3Q01955 RNY4P36-201ENST00000391116 96 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 RNU6-1304P-201ENST00000411374 106 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 OR6C66P-201ENST00000414917 930 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A3Q01955 AL451050.1-201ENST00000450126 415 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC022431.1-201ENST00000450941 438 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A3Q01955 BX510359.1-201ENST00000456973 237 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 RNU7-152P-201ENST00000458982 64 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC021382.1-201ENST00000483523 359 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC092436.1-201ENST00000506450 503 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 RNU6-864P-201ENST00000516256 108 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AP005435.4-201ENST00000529514 284 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 OR4P1P-201ENST00000530808 1136 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC018630.1-201ENST00000541376 925 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC010653.1-201ENST00000571108 881 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 MTND6P33-201ENST00000571794 183 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A3Q01955 AC233702.9-201ENST00000581528 203 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.03□□□□□ -1.76
COL4A3Q01955 U3.45-201ENST00000607547 219 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC103710.2-201ENST00000609912 942 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 uc_338.11-201ENST00000619132 160 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 AC119674.1-207ENST00000641355 633 ntBASIC4.03□□□□□ -1.76
COL4A3Q01955 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.03□□□□□ -1.76
COL4A3Q01955 ELL2P4-201ENST00000446870 1376 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.02□□□□□ -1.77
COL4A3Q01955 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A3Q01955 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A3Q01955 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A3Q01955 SAMMSON-213ENST00000641336 1521 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AC074029.4-201ENST00000624796 1859 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A3Q01955 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC4.02□□□□□ -1.77
COL4A3Q01955 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.02□□□□□ -1.77
COL4A3Q01955 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
COL4A3Q01955 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.02□□□□□ -1.77
COL4A3Q01955 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.02□□□□□ -1.77
COL4A3Q01955 Y_RNA.31-201ENST00000362574 102 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 SNORD35B-201ENST00000363660 87 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 RNA5SP97-201ENST00000365006 84 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 Y_RNA.414-201ENST00000384011 101 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms