Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
RNF4P78317 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
RNF4P78317 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.58□□□□□ -1.68
RNF4P78317 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
RNF4P78317 Y_RNA.80-201ENST00000362996 102 ntBASIC4.58□□□□□ -1.68
RNF4P78317 RNU6-238P-201ENST00000363313 106 ntBASIC4.58□□□□□ -1.68
RNF4P78317 RNU6-371P-201ENST00000364283 108 ntBASIC4.58□□□□□ -1.68
RNF4P78317 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
RNF4P78317 RNU6-1074P-201ENST00000383995 104 ntBASIC4.58□□□□□ -1.68
RNF4P78317 MIR517A-201ENST00000385001 87 ntBASIC4.58□□□□□ -1.68
RNF4P78317 AL133270.1-201ENST00000402635 279 ntBASIC4.58□□□□□ -1.68
RNF4P78317 RN7SKP16-201ENST00000410180 299 ntBASIC4.58□□□□□ -1.68
RNF4P78317 AC096664.2-201ENST00000411843 406 ntBASIC4.58□□□□□ -1.68
RNF4P78317 EIF4EP1-201ENST00000422311 642 ntBASIC4.58□□□□□ -1.68
RNF4P78317 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4.58□□□□□ -1.68
RNF4P78317 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
RNF4P78317 CBX3P6-201ENST00000430257 527 ntBASIC4.58□□□□□ -1.68
RNF4P78317 AC073063.1-201ENST00000434352 607 ntBASIC4.58□□□□□ -1.68
RNF4P78317 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.58□□□□□ -1.68
RNF4P78317 HMGB1P12-201ENST00000438594 598 ntBASIC4.58□□□□□ -1.68
RNF4P78317 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.58□□□□□ -1.68
RNF4P78317 RPS17P2-201ENST00000461663 408 ntBASIC4.58□□□□□ -1.68
RNF4P78317 RPS3AP41-201ENST00000462701 778 ntBASIC4.58□□□□□ -1.68
RNF4P78317 AC018437.1-201ENST00000492214 406 ntBASIC4.58□□□□□ -1.68
RNF4P78317 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.58□□□□□ -1.68
RNF4P78317 AC110794.1-201ENST00000505816 425 ntBASIC4.58□□□□□ -1.68
RNF4P78317 AC023442.1-201ENST00000531247 422 ntBASIC4.58□□□□□ -1.68
RNF4P78317 SNRPGP16-201ENST00000533275 226 ntBASIC4.58□□□□□ -1.68
RNF4P78317 BDH2P1-201ENST00000602288 736 ntBASIC4.58□□□□□ -1.68
RNF4P78317 AC087385.3-201ENST00000620477 187 ntBASIC4.58□□□□□ -1.68
RNF4P78317 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
RNF4P78317 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
RNF4P78317 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.58□□□□□ -1.68
RNF4P78317 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.58□□□□□ -1.68
RNF4P78317 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.58□□□□□ -1.68
RNF4P78317 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.58□□□□□ -1.68
RNF4P78317 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.58□□□□□ -1.68
RNF4P78317 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
RNF4P78317 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
RNF4P78317 AC104623.2-202ENST00000623477 4002 ntBASIC4.57□□□□□ -1.68
RNF4P78317 Y_RNA.389-201ENST00000383924 113 ntBASIC4.57□□□□□ -1.68
RNF4P78317 Y_RNA.480-201ENST00000384364 102 ntBASIC4.57□□□□□ -1.68
RNF4P78317 Y_RNA.485-201ENST00000384395 102 ntBASIC4.57□□□□□ -1.68
RNF4P78317 Y_RNA.574-201ENST00000384766 95 ntBASIC4.57□□□□□ -1.68
RNF4P78317 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.57□□□□□ -1.68
RNF4P78317 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.57□□□□□ -1.68
RNF4P78317 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.57□□□□□ -1.68
RNF4P78317 NUP35P1-201ENST00000422734 947 ntBASIC4.57□□□□□ -1.68
RNF4P78317 MRPS18CP6-201ENST00000423587 223 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.57□□□□□ -1.68
RNF4P78317 TDGF1P1-201ENST00000445734 527 ntBASIC4.57□□□□□ -1.68
RNF4P78317 FTH1P25-201ENST00000447665 469 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AC009963.2-201ENST00000453431 138 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.57□□□□□ -1.68
RNF4P78317 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.57□□□□□ -1.68
RNF4P78317 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.57□□□□□ -1.68
RNF4P78317 RPL23AP2-201ENST00000471227 466 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.57□□□□□ -1.68
RNF4P78317 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.57□□□□□ -1.68
RNF4P78317 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.57□□□□□ -1.68
RNF4P78317 AL121603.1-201ENST00000553815 142 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.57□□□□□ -1.68
RNF4P78317 AC109446.1-201ENST00000566172 220 ntBASIC4.57□□□□□ -1.68
RNF4P78317 MIR5692A1-201ENST00000580523 69 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AC018889.1-201ENST00000605372 397 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AL161616.1-201ENST00000611867 286 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AL049539.1-201ENST00000611964 459 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AL031601.2-202ENST00000622650 282 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AC006065.5-201ENST00000623427 349 ntBASIC4.57□□□□□ -1.68
RNF4P78317 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.57□□□□□ -1.68
RNF4P78317 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.57□□□□□ -1.68
RNF4P78317 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
RNF4P78317 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.57□□□□□ -1.68
RNF4P78317 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.57□□□□□ -1.68
RNF4P78317 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
RNF4P78317 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.57□□□□□ -1.68
RNF4P78317 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
RNF4P78317 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.56□□□□□ -1.68
RNF4P78317 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNF4P78317 AC091812.1-201ENST00000432235 1948 ntBASIC4.56□□□□□ -1.68
RNF4P78317 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
RNF4P78317 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNF4P78317 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.56□□□□□ -1.68
RNF4P78317 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
RNF4P78317 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
RNF4P78317 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNF4P78317 RNU6-1329P-201ENST00000365664 107 ntBASIC4.56□□□□□ -1.68
RNF4P78317 SNORA36C-201ENST00000384289 132 ntBASIC4.56□□□□□ -1.68
RNF4P78317 MIR708-201ENST00000390708 88 ntBASIC4.56□□□□□ -1.68
RNF4P78317 Y_RNA.618-201ENST00000410949 107 ntBASIC4.56□□□□□ -1.68
RNF4P78317 RNU6-55P-201ENST00000411092 107 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms