Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC090255.1-201ENST00000495779 349 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.04□□□□□ -2.08
FOXA1P55317 AC008427.1-201ENST00000503102 655 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC2.04□□□□□ -2.08
FOXA1P55317 RN7SKP40-201ENST00000517211 242 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 IGLV3-17-201ENST00000519099 244 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 OR5AK1P-201ENST00000524837 922 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
FOXA1P55317 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA1P55317 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXA1P55317 AC125611.1-201ENST00000549563 229 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AC104072.1-201ENST00000568817 668 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 MYL12BP1-201ENST00000569826 507 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AL035411.2-201ENST00000604022 421 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AL022099.1-201ENST00000604551 712 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AC009570.1-201ENST00000609599 745 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXA1P55317 MIR6132-201ENST00000622083 109 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AL356585.4-201ENST00000623078 1229 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AC090740.1-201ENST00000623193 2262 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXA1P55317 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXA1P55317 CU459211.1-201ENST00000635667 749 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.03□□□□□ -2.08
FOXA1P55317 AC011460.1-201ENST00000636268 1834 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 RNU5D-1-201ENST00000363299 116 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 SNORA67.1-201ENST00000364749 141 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 Y_RNA.578-201ENST00000390903 88 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 AL136372.1-201ENST00000403060 228 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 AL450338.1-201ENST00000407987 512 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 HMGB3P2-201ENST00000411913 584 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 MTND1P23-201ENST00000416931 372 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA1P55317 TMEM167AP1-201ENST00000423409 219 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 TRBV26OR9-2-201ENST00000432077 293 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 RPL7P36-201ENST00000444633 681 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 AL590664.1-201ENST00000448065 339 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXA1P55317 AC025033.1-201ENST00000463883 194 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 AC104629.1-201ENST00000494226 508 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC2.03□□□□□ -2.08
FOXA1P55317 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA1P55317 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
FOXA1P55317 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA1P55317 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXA1P55317 SETP7-201ENST00000552169 453 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA1P55317 AP003476.1-201ENST00000623984 516 ntBASIC2.03□□□□□ -2.08
FOXA1P55317 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC2.03□□□□□ -2.08
FOXA1P55317 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
FOXA1P55317 AP005901.5-201ENST00000545779 1796 ntBASIC2.03□□□□□ -2.09
FOXA1P55317 PABPC1P9-201ENST00000426076 1612 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 OR4G11P-202ENST00000642116 1414 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
FOXA1P55317 SNRPEP3-201ENST00000338402 276 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
FOXA1P55317 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
FOXA1P55317 SNORA51.11-201ENST00000384442 131 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 SNORA1.3-201ENST00000384676 136 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 MIR144-201ENST00000384886 86 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 MIR493-201ENST00000385254 89 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 RNU2-42P-201ENST00000410697 113 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 Z75741.2-201ENST00000417272 1167 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AL137014.1-201ENST00000420490 1226 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 MTCO3P30-201ENST00000426425 670 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 EZH2P1-201ENST00000431167 291 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 GTF2IP7-202ENST00000436677 309 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA1P55317 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXA1P55317 AC004866.2-201ENST00000438285 481 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA1P55317 AC092427.1-201ENST00000439177 601 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 RPS15AP7-201ENST00000439294 405 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AL121871.1-201ENST00000443413 436 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA1P55317 OR6K5P-201ENST00000447050 945 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 MTCYBP11-201ENST00000447254 1109 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 RPL39P6-201ENST00000448289 150 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AC005297.2-201ENST00000450430 606 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AC011753.1-201ENST00000451001 220 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA1P55317 AL031183.1-201ENST00000457667 207 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 PNPLA4P1-201ENST00000458328 305 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 RPS15AP17-201ENST00000470598 390 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 TRBV12-1-201ENST00000479785 344 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXA1P55317 COX7A2P2-201ENST00000505291 250 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 SUMO2P5-201ENST00000506790 245 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 CDC42P4-201ENST00000510507 563 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA1P55317 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA1P55317 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA1P55317 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA1P55317 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA1P55317 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
FOXA1P55317 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA1P55317 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA1P55317 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms