Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.22□□□□□ -2.05
COL18A1P39060 AL731537.2-201ENST00000561565 951 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 LINC00557-201ENST00000563184 1279 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 BPTFP1-201ENST00000579209 492 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.22□□□□□ -2.05
COL18A1P39060 AC009220.3-201ENST00000604318 586 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.22□□□□□ -2.05
COL18A1P39060 RMST_2.1-201ENST00000617263 136 ntBASIC2.22□□□□□ -2.05
COL18A1P39060 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC2.22□□□□□ -2.05
COL18A1P39060 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL18A1P39060 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
COL18A1P39060 SNORD56.4-201ENST00000363883 71 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 MIR649-201ENST00000384843 97 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 RNU1-101P-201ENST00000391171 127 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.21□□□□□ -2.06
COL18A1P39060 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC2.21□□□□□ -2.06
COL18A1P39060 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.21□□□□□ -2.06
COL18A1P39060 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.21□□□□□ -2.06
COL18A1P39060 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC2.21□□□□□ -2.06
COL18A1P39060 AC010285.1-201ENST00000470580 392 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 RNU6-202P-201ENST00000515998 96 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 RN7SKP40-201ENST00000517211 242 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 SNORA31.26-201ENST00000517250 137 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 OSBPL9P3-201ENST00000534523 595 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.21□□□□□ -2.06
COL18A1P39060 AC013468.1-201ENST00000608680 598 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 AC012150.2-201ENST00000621300 544 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
COL18A1P39060 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.21□□□□□ -2.06
COL18A1P39060 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
COL18A1P39060 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.21□□□□□ -2.06
COL18A1P39060 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
COL18A1P39060 RNU6-263P-201ENST00000363811 107 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 RNU6-374P-201ENST00000364146 108 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 Z98749.2-208ENST00000381646 500 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 RPL17P12-201ENST00000413391 526 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 MTCO3P12-201ENST00000416718 547 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 AC009237.2-201ENST00000421358 284 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 VN1R42P-201ENST00000424651 344 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 AC009961.3-201ENST00000449832 765 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 ARL4AP2-201ENST00000507378 601 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC2.21□□□□□ -2.06
COL18A1P39060 MTCO3P44-201ENST00000510977 541 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 MTND5P4-201ENST00000514978 288 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 SNORA76.2-201ENST00000517095 137 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 SNORA31.20-201ENST00000517111 133 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 PRELID2P1-201ENST00000552837 301 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 AL049838.1-201ENST00000563647 981 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.21□□□□□ -2.06
COL18A1P39060 MYL12BP1-201ENST00000569826 507 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 AL669831.4-202ENST00000590817 238 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
COL18A1P39060 AC098679.5-201ENST00000624394 571 ntBASIC2.21□□□□□ -2.06
COL18A1P39060 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.2□□□□□ -2.06
COL18A1P39060 RNU6-582P-201ENST00000362989 107 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 RNU6-53P-201ENST00000365367 106 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 Y_RNA.493-201ENST00000384422 102 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 RPL21P75-201ENST00000396599 483 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 RPL21P1-201ENST00000399532 476 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 RPL21P28-201ENST00000401418 483 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AL592114.1-201ENST00000403842 483 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.2□□□□□ -2.06
COL18A1P39060 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.2□□□□□ -2.06
COL18A1P39060 RPL7P46-201ENST00000425129 740 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AC109583.1-201ENST00000432156 268 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.2□□□□□ -2.06
COL18A1P39060 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.2□□□□□ -2.06
COL18A1P39060 RNFT1P2-201ENST00000443064 757 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AL929288.2-201ENST00000446368 407 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AC004022.1-201ENST00000447766 1066 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.2□□□□□ -2.06
COL18A1P39060 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.2□□□□□ -2.06
COL18A1P39060 snoU13.4-201ENST00000458916 104 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL18A1P39060 RPL7P5-201ENST00000471472 736 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 RPL21P16-201ENST00000495531 483 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL18A1P39060 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL18A1P39060 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL18A1P39060 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL18A1P39060 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL18A1P39060 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL18A1P39060 IGLV3-17-201ENST00000519099 244 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.2□□□□□ -2.06
COL18A1P39060 LSM6P2-201ENST00000552208 177 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AL512598.1-201ENST00000610158 273 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AC131902.3-201ENST00000611767 581 ntBASIC2.2□□□□□ -2.06
COL18A1P39060 AL391987.6-201ENST00000305671 199 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL18A1P39060 RNA5SP258-201ENST00000362750 119 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 SNORA16.1-201ENST00000364597 132 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
COL18A1P39060 AL591034.1-201ENST00000407447 340 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 USP9YP27-201ENST00000418455 438 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.19□□□□□ -2.06
COL18A1P39060 RPP40P1-201ENST00000426762 456 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 AC009238.1-201ENST00000442165 424 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 AC009237.6-201ENST00000446969 424 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 RPL21P47-201ENST00000483696 477 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms