Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RPL5P13-201ENST00000462840 709 ntBASIC1.34□□□□□ -2.19
HMGA1P17096 TOMM22P6-201ENST00000465035 409 ntBASIC1.34□□□□□ -2.19
HMGA1P17096 HMGB3P17-201ENST00000504195 649 ntBASIC1.34□□□□□ -2.19
HMGA1P17096 Y_RNA.673-201ENST00000516306 88 ntBASIC1.34□□□□□ -2.19
HMGA1P17096 RN7SKP96-201ENST00000516948 297 ntBASIC1.34□□□□□ -2.19
HMGA1P17096 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.34□□□□□ -2.19
HMGA1P17096 AC083923.1-201ENST00000523708 376 ntBASIC1.34□□□□□ -2.19
HMGA1P17096 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.34□□□□□ -2.19
HMGA1P17096 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.34□□□□□ -2.19
HMGA1P17096 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.34□□□□□ -2.19
HMGA1P17096 AC135178.6-201ENST00000605314 398 ntBASIC1.34□□□□□ -2.19
HMGA1P17096 AL355816.1-201ENST00000607951 118 ntBASIC1.34□□□□□ -2.19
HMGA1P17096 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
HMGA1P17096 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.34□□□□□ -2.2
HMGA1P17096 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
HMGA1P17096 SNORA3A-201ENST00000364113 130 ntBASIC1.33□□□□□ -2.2
HMGA1P17096 MIR758-201ENST00000390227 88 ntBASIC1.33□□□□□ -2.2
HMGA1P17096 AC098592.2-201ENST00000413158 265 ntBASIC1.33□□□□□ -2.2
HMGA1P17096 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC1.33□□□□□ -2.2
HMGA1P17096 AL137159.1-201ENST00000452808 512 ntBASIC1.33□□□□□ -2.2
HMGA1P17096 AC078857.1-201ENST00000469870 667 ntBASIC1.33□□□□□ -2.2
HMGA1P17096 RPL36AP21-201ENST00000490372 323 ntBASIC1.33□□□□□ -2.2
HMGA1P17096 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.33□□□□□ -2.2
HMGA1P17096 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC1.33□□□□□ -2.2
HMGA1P17096 AC068338.1-201ENST00000565567 176 ntBASIC1.33□□□□□ -2.2
HMGA1P17096 AC090897.2-201ENST00000581715 130 ntBASIC1.33□□□□□ -2.2
HMGA1P17096 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.33□□□□□ -2.2
HMGA1P17096 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
HMGA1P17096 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.32□□□□□ -2.2
HMGA1P17096 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.32□□□□□ -2.2
HMGA1P17096 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
HMGA1P17096 MIR499A-201ENST00000384903 122 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 ZNF90P2-204ENST00000419323 1075 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.32□□□□□ -2.2
HMGA1P17096 ELOCP11-201ENST00000436690 332 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 ELOCP16-201ENST00000444494 332 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 AL627224.1-201ENST00000448334 444 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC1.32□□□□□ -2.2
HMGA1P17096 RNA5SP233-201ENST00000459153 113 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 AC010285.1-201ENST00000470580 392 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 AC010301.1-201ENST00000473936 355 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.32□□□□□ -2.2
HMGA1P17096 COL6A4P2-205ENST00000509855 506 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.32□□□□□ -2.2
HMGA1P17096 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
HMGA1P17096 AC010928.2-201ENST00000588017 287 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 AC073413.2-201ENST00000604332 360 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 AL136363.1-201ENST00000605349 337 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 SNORD14A-201ENST00000606526 91 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 MIR6078-201ENST00000611069 100 ntBASIC1.32□□□□□ -2.2
HMGA1P17096 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC1.32□□□□□ -2.2
HMGA1P17096 SNORA25.9-201ENST00000365087 128 ntBASIC1.31□□□□□ -2.2
HMGA1P17096 MIR17-201ENST00000385012 84 ntBASIC1.31□□□□□ -2.2
HMGA1P17096 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC1.31□□□□□ -2.2
HMGA1P17096 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.31□□□□□ -2.2
HMGA1P17096 OR1M4P-201ENST00000589199 287 ntBASIC1.31□□□□□ -2.2
HMGA1P17096 WISP1-OT1-201ENST00000602893 642 ntBASIC1.31□□□□□ -2.2
HMGA1P17096 AC091895.1-201ENST00000624494 256 ntBASIC1.31□□□□□ -2.2
HMGA1P17096 MIR4496-201ENST00000635896 61 ntBASIC1.31□□□□□ -2.2
HMGA1P17096 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
HMGA1P17096 CIR1P3-201ENST00000405137 479 ntBASIC1.3□□□□□ -2.2
HMGA1P17096 LAMTOR3P1-201ENST00000428620 370 ntBASIC1.3□□□□□ -2.2
HMGA1P17096 UBE2V1P6-201ENST00000430840 422 ntBASIC1.3□□□□□ -2.2
HMGA1P17096 AL035407.2-201ENST00000454090 378 ntBASIC1.3□□□□□ -2.2
HMGA1P17096 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.3□□□□□ -2.2
HMGA1P17096 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGA1P17096 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.3□□□□□ -2.2
HMGA1P17096 GLUD1P4-201ENST00000590914 418 ntBASIC1.3□□□□□ -2.2
HMGA1P17096 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC1.3□□□□□ -2.2
HMGA1P17096 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC1.3□□□□□ -2.2
HMGA1P17096 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.3□□□□□ -2.2
HMGA1P17096 AC021755.4-201ENST00000616620 456 ntBASIC1.3□□□□□ -2.2
HMGA1P17096 HOTTIP_4.1-201ENST00000618195 165 ntBASIC1.3□□□□□ -2.2
HMGA1P17096 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.3□□□□□ -2.2
HMGA1P17096 CDC27P3-201ENST00000635418 1910 ntBASIC1.3□□□□□ -2.2
HMGA1P17096 RNU1-22P-201ENST00000363334 158 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 SNORA38-201ENST00000363946 132 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 RNU6-707P-201ENST00000364647 95 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 AL023807.1-201ENST00000407932 359 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGA1P17096 UBE2D3P2-201ENST00000424409 445 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGA1P17096 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGA1P17096 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.29□□□□□ -2.2
HMGA1P17096 HMGB1P26-201ENST00000452520 628 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 MTCO1P42-201ENST00000457379 726 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 MTCYBP35-201ENST00000503630 1137 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.29□□□□□ -2.2
HMGA1P17096 AC108120.2-201ENST00000512973 294 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.29□□□□□ -2.2
HMGA1P17096 RNA5SP102-201ENST00000516865 106 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 BTF3P12-201ENST00000519620 469 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGA1P17096 AL354943.1-201ENST00000572103 781 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGA1P17096 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.29□□□□□ -2.2
HMGA1P17096 AC080078.3-201ENST00000605407 463 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGA1P17096 SDR42E1P2-201ENST00000614861 481 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms