Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.34□□□□□ -2.19
COL6A3P12111 RNU6-43P-201ENST00000384302 107 ntBASIC1.34□□□□□ -2.2
COL6A3P12111 JTBP1-201ENST00000441314 247 ntBASIC1.34□□□□□ -2.2
COL6A3P12111 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC1.34□□□□□ -2.2
COL6A3P12111 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC1.34□□□□□ -2.2
COL6A3P12111 AC005498.1-201ENST00000592125 465 ntBASIC1.34□□□□□ -2.2
COL6A3P12111 RNU6-1305P-201ENST00000364353 104 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 AC060773.1-201ENST00000421698 310 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.33□□□□□ -2.2
COL6A3P12111 OR9N1P-202ENST00000494289 481 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 AC093752.1-206ENST00000511823 336 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 AC121758.2-201ENST00000553271 193 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.33□□□□□ -2.2
COL6A3P12111 AC091925.1-201ENST00000623204 462 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 AP000560.1-201ENST00000624150 1937 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
COL6A3P12111 GAS5-AS1-201ENST00000602767 694 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 AL161912.3-201ENST00000605404 628 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.33□□□□□ -2.2
COL6A3P12111 AP003072.2-201ENST00000527756 676 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 GLUD1P4-201ENST00000590914 418 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 AL135786.2-201ENST00000608422 615 ntBASIC1.33□□□□□ -2.2
COL6A3P12111 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
COL6A3P12111 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
COL6A3P12111 AC099548.1-201ENST00000421443 426 ntBASIC1.32□□□□□ -2.2
COL6A3P12111 DPPA2P1-201ENST00000428060 556 ntBASIC1.32□□□□□ -2.2
COL6A3P12111 AL109741.2-201ENST00000455561 343 ntBASIC1.32□□□□□ -2.2
COL6A3P12111 AC092902.1-201ENST00000486999 259 ntBASIC1.32□□□□□ -2.2
COL6A3P12111 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.32□□□□□ -2.2
COL6A3P12111 VTA1P2-201ENST00000520205 911 ntBASIC1.32□□□□□ -2.2
COL6A3P12111 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.32□□□□□ -2.2
COL6A3P12111 AC016877.3-201ENST00000606778 504 ntBASIC1.32□□□□□ -2.2
COL6A3P12111 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.32□□□□□ -2.2
COL6A3P12111 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
COL6A3P12111 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.32□□□□□ -2.2
COL6A3P12111 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.32□□□□□ -2.2
COL6A3P12111 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.32□□□□□ -2.2
COL6A3P12111 RPL23AP88-201ENST00000605759 454 ntBASIC1.32□□□□□ -2.2
COL6A3P12111 MIR6513-201ENST00000621188 64 ntBASIC1.32□□□□□ -2.2
COL6A3P12111 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC1.32□□□□□ -2.2
COL6A3P12111 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC1.32□□□□□ -2.2
COL6A3P12111 Z86062.1-201ENST00000406773 777 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 OR51B8P-201ENST00000449892 769 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 DUXAP3-201ENST00000603616 594 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 AC068700.1-201ENST00000565862 3754 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 AL354685.2-201ENST00000448218 1447 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 EFTUD1P2-201ENST00000514817 1603 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 HMGN2P38-201ENST00000423806 265 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 CBX3P6-201ENST00000430257 527 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 AC234064.1-201ENST00000436312 247 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 SNRPGP13-201ENST00000442212 177 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.31□□□□□ -2.2
COL6A3P12111 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.31□□□□□ -2.2
COL6A3P12111 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC1.31□□□□□ -2.2
COL6A3P12111 AP000254.1-201ENST00000609934 520 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
COL6A3P12111 RNU6-48P-201ENST00000384161 107 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 RNA5SP212-201ENST00000391223 107 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC1.31□□□□□ -2.2
COL6A3P12111 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.31□□□□□ -2.2
COL6A3P12111 MTCYBP37-201ENST00000510642 1133 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC1.31□□□□□ -2.2
COL6A3P12111 CBX3P2-202ENST00000583365 535 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 VN1R107P-201ENST00000601784 209 ntBASIC1.31□□□□□ -2.2
COL6A3P12111 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.31□□□□□ -2.2
COL6A3P12111 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.31□□□□□ -2.2
COL6A3P12111 AL118496.1-201ENST00000440201 1812 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 RNU2-25P-201ENST00000411041 191 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.3□□□□□ -2.2
COL6A3P12111 SEC63P1-201ENST00000425785 1258 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 OFD1P13Y-201ENST00000431179 1232 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 MTCYBP45-201ENST00000435243 565 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 OR10R1P-201ENST00000441524 1141 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 RPL21P131-201ENST00000497298 483 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC1.3□□□□□ -2.2
COL6A3P12111 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
COL6A3P12111 MIR320A-201ENST00000385302 82 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 SSXP10-201ENST00000402595 565 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 FCF1P2-201ENST00000415284 583 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 PGBD4P6-201ENST00000421501 610 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 SNORD121B-201ENST00000458838 81 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 AC010928.2-201ENST00000588017 287 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 AC008083.4-201ENST00000615076 444 ntBASIC1.3□□□□□ -2.2
COL6A3P12111 Y_RNA.572-201ENST00000384757 98 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 HMGB1P13-201ENST00000406019 642 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 MIR1304-201ENST00000408243 91 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC1.29□□□□□ -2.2
COL6A3P12111 AL591212.2-201ENST00000433923 257 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.29□□□□□ -2.2
COL6A3P12111 PTGES3P5-201ENST00000455109 434 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC1.29□□□□□ -2.2
COL6A3P12111 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC1.29□□□□□ -2.2
COL6A3P12111 MIR4446-201ENST00000578505 67 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 XIST_intron.1-201ENST00000619444 68 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.29□□□□□ -2.2
COL6A3P12111 RNU6-461P-201ENST00000364195 107 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.29□□□□□ -2.2
COL6A3P12111 RPL23AP41-201ENST00000484754 458 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 RNA5SP309-201ENST00000516670 106 ntBASIC1.29□□□□□ -2.2
COL6A3P12111 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms