Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 Y_RNA.46-201ENST00000362695 102 ntBASIC3.12□□□□□ -1.91
VIMP08670 MIR181B1-201ENST00000385240 110 ntBASIC3.12□□□□□ -1.91
VIMP08670 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
VIMP08670 SNORA57.1-201ENST00000391227 145 ntBASIC3.12□□□□□ -1.91
VIMP08670 SNORD88.1-201ENST00000408684 91 ntBASIC3.12□□□□□ -1.91
VIMP08670 MIR1289-1-201ENST00000408836 144 ntBASIC3.12□□□□□ -1.91
VIMP08670 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.12□□□□□ -1.91
VIMP08670 AL451054.2-201ENST00000420896 202 ntBASIC3.12□□□□□ -1.91
VIMP08670 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.12□□□□□ -1.91
VIMP08670 RPL37P21-201ENST00000435890 276 ntBASIC3.12□□□□□ -1.91
VIMP08670 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.12□□□□□ -1.91
VIMP08670 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.12□□□□□ -1.91
VIMP08670 AL049734.2-201ENST00000441066 616 ntBASIC3.12□□□□□ -1.91
VIMP08670 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.12□□□□□ -1.91
VIMP08670 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.12□□□□□ -1.91
VIMP08670 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.12□□□□□ -1.91
VIMP08670 RNU6-420P-201ENST00000458780 107 ntBASIC3.12□□□□□ -1.91
VIMP08670 RPL21P41-201ENST00000459863 264 ntBASIC3.12□□□□□ -1.91
VIMP08670 AC010631.1-201ENST00000474150 156 ntBASIC3.12□□□□□ -1.91
VIMP08670 RPS3AP22-201ENST00000488297 769 ntBASIC3.12□□□□□ -1.91
VIMP08670 RN7SL633P-201ENST00000488974 297 ntBASIC3.12□□□□□ -1.91
VIMP08670 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VIMP08670 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.12□□□□□ -1.91
VIMP08670 AC098799.2-201ENST00000509466 868 ntBASIC3.12□□□□□ -1.91
VIMP08670 CDC42P4-201ENST00000510507 563 ntBASIC3.12□□□□□ -1.91
VIMP08670 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.12□□□□□ -1.91
VIMP08670 AP002748.2-201ENST00000528671 348 ntBASIC3.12□□□□□ -1.91
VIMP08670 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.12□□□□□ -1.91
VIMP08670 AC123904.3-201ENST00000547218 814 ntBASIC3.12□□□□□ -1.91
VIMP08670 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.12□□□□□ -1.91
VIMP08670 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.12□□□□□ -1.91
VIMP08670 MIR3160-1-201ENST00000577972 85 ntBASIC3.12□□□□□ -1.91
VIMP08670 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.12□□□□□ -1.91
VIMP08670 AC090616.2-202ENST00000584248 222 ntBASIC3.12□□□□□ -1.91
VIMP08670 GLUD1P4-201ENST00000590914 418 ntBASIC3.12□□□□□ -1.91
VIMP08670 AL359198.2-201ENST00000611836 194 ntBASIC3.12□□□□□ -1.91
VIMP08670 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.12□□□□□ -1.91
VIMP08670 AL049641.1-201ENST00000441055 1948 ntBASIC3.12□□□□□ -1.91
VIMP08670 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VIMP08670 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VIMP08670 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VIMP08670 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VIMP08670 RNY4P24-201ENST00000362735 96 ntBASIC3.11□□□□□ -1.91
VIMP08670 RNU6-270P-201ENST00000364131 105 ntBASIC3.11□□□□□ -1.91
VIMP08670 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VIMP08670 MIR218-2-201ENST00000385006 110 ntBASIC3.11□□□□□ -1.91
VIMP08670 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 Z85995.1-201ENST00000415547 335 ntBASIC3.11□□□□□ -1.91
VIMP08670 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.11□□□□□ -1.91
VIMP08670 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.11□□□□□ -1.91
VIMP08670 AC007919.1-201ENST00000429380 217 ntBASIC3.11□□□□□ -1.91
VIMP08670 ATP5JP1-201ENST00000431631 322 ntBASIC3.11□□□□□ -1.91
VIMP08670 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.11□□□□□ -1.91
VIMP08670 AC092641.1-201ENST00000440229 772 ntBASIC3.11□□□□□ -1.91
VIMP08670 Z96811.1-201ENST00000445880 108 ntBASIC3.11□□□□□ -1.91
VIMP08670 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.11□□□□□ -1.91
VIMP08670 AL139824.2-201ENST00000458731 1095 ntBASIC3.11□□□□□ -1.91
VIMP08670 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VIMP08670 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.11□□□□□ -1.91
VIMP08670 ACTR3P3-201ENST00000480448 893 ntBASIC3.11□□□□□ -1.91
VIMP08670 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.11□□□□□ -1.91
VIMP08670 MRPS33P3-201ENST00000513456 322 ntBASIC3.11□□□□□ -1.91
VIMP08670 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.11□□□□□ -1.91
VIMP08670 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 HIGD1AP1-201ENST00000550979 275 ntBASIC3.11□□□□□ -1.91
VIMP08670 PCMTD1P2-201ENST00000565017 355 ntBASIC3.11□□□□□ -1.91
VIMP08670 AMZ2P1-203ENST00000565833 850 ntBASIC3.11□□□□□ -1.91
VIMP08670 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 MIR4697-201ENST00000582977 78 ntBASIC3.11□□□□□ -1.91
VIMP08670 AC023043.3-201ENST00000593113 385 ntBASIC3.11□□□□□ -1.91
VIMP08670 AC079089.3-201ENST00000603094 673 ntBASIC3.11□□□□□ -1.91
VIMP08670 AL360219.1-201ENST00000610230 366 ntBASIC3.11□□□□□ -1.91
VIMP08670 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 uc_338.25-201ENST00000613756 156 ntBASIC3.11□□□□□ -1.91
VIMP08670 AC091304.6-201ENST00000619761 202 ntBASIC3.11□□□□□ -1.91
VIMP08670 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 AC006927.3-201ENST00000638789 384 ntBASIC3.11□□□□□ -1.91
VIMP08670 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
VIMP08670 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.11□□□□□ -1.91
VIMP08670 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.1□□□□□ -1.91
VIMP08670 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
VIMP08670 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.1□□□□□ -1.91
VIMP08670 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VIMP08670 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VIMP08670 RNU4-35P-201ENST00000362588 141 ntBASIC3.1□□□□□ -1.91
VIMP08670 RNU6-501P-201ENST00000364072 100 ntBASIC3.1□□□□□ -1.91
VIMP08670 RNU6-741P-201ENST00000383889 107 ntBASIC3.1□□□□□ -1.91
VIMP08670 RNU6-809P-201ENST00000384461 107 ntBASIC3.1□□□□□ -1.91
VIMP08670 RPS20P2-201ENST00000402520 389 ntBASIC3.1□□□□□ -1.91
VIMP08670 AL513331.1-201ENST00000411908 397 ntBASIC3.1□□□□□ -1.91
VIMP08670 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.1□□□□□ -1.91
VIMP08670 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.1□□□□□ -1.91
VIMP08670 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.1□□□□□ -1.91
VIMP08670 AL365184.2-201ENST00000431139 435 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms